Gene detail

Gene detail information of Glyur000898s00033187

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52490.1	2.00E-121	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
NR	XP_003518191.1	0	PREDICTED: uncharacterized protein LOC100807485 [Glycine max]
Swissprot	tr\|P42730\|CLPB1_ARATH	6.00E-09	Chaperone protein ClpB1
trEMBL	tr\|I1JGI9\|I1JGI9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G35690.1}

Sequence

Transcript Sequence

>Glyur000898s00033187.1
CTCTCTCTCTCTCCTAGTCTTTTAGACCAAACCACCATCTTTTTCAATCATATTCTAGAGAGACAAGGTACAAAACAAACAAGTTTCATGACAAGAAAAAAAAATTCGTGAAGAATCATTCACTACCCAATCCATACATATAGAGCCCTCAAAACCTAGCTTCCTATCATCATACACACCAACTAACACTTTGGTTCTTCAATTCTTCACCCTAACTCCTCCCTATAGCTCTTCCCCATCATTAAATTCTCTCAATCCAAATCAACACCACCTTATACGTATATGAAGCACAAGATGCCAACAACAACGCTTCATACTTACTACCATCAATTCCCAGAGCGTCTCTTTTAAGTAGTTAAAACTGGACANAACTTGTATTCTGTTTTAGTTGCTTTCTGTTTCAATAATATTTTTAGCTAGCTCAGAGCTTCTCTTGAAGGGATCGACGGATAATCATGAGANCAGGAAGCTGTGCCGTGCAACAAGGCCTAACAACAGAGGCAGCAAGCATAGTGAAACAAGCAGTGACACTCGCTAAGCGACGTGGACATGCTCAAGTGACACCACTCCACGTGGCAAGCACCATGCTCAGCATCACCAACGGTTTGTTAAGAACTGCTTGTCTCCAATCTCATTCCCACCCTCTTCAGTGTAAAGCCTTAGAGCTTTGCTTCAACGTTGCACTTAACCGTTTNCCAGCAACAACAACAACTTCTTCTAGTAACCCCATGTTGGGTGGTGGACCCCACAATCATCACTCTCAGTGTCCTTCAATCTCTAACGCTTTAGTTGCTGCTTTCAAGCGCGCTCAGGCTCACCAACGCCGTGGATCCATTGAGAACCAGCAACAACCGCTTCTTGCGGTGAAGATTGAGATCGAACAACTCATAATCTCAATCTTGGATGACCCAAGTGTTAGTAGAGTCATGAGAGAAGCTGGGTTTAATAGTACCCAAGTTAAAAGCAACGTTGAACAAGCCGTGTCCTTGGAAATATGCTCCTCTCAAAACACCAACAACAACAACGACCCTTCTTCTAAGTCAAAGGAAAACAACAACAACAACAACAACAATAATAACAATCCAATTCCGACCCTGATCATCGGATCCGACACAAAAAACGTGGTGTCAGATCAGATGACCAGGGACGAGGACATCGAAAGTGTGGTGGATAGTTTGAAGAGTAGTAGTACTCAAAGGAGAAGTGTTGTGGTTGTTGGAGAGTGTGTNGATACTCTTGAAGGTGTTGTTAGAGGGGTGATGGATAAGGTTGAGAAAGGGGGTGTCAAGTTTGTGTCTCTTTCTCTTGCTGATTTTGGGAATGTTTCAAGGGTAGAGGTTGATCAAAAGATTGAAGAGCTTAAGGGCCTTATTGCAAAAAGGGGCNCAAATGGGTATGTTTTGTATCTTGGGGATCTTAAATGGGTGTTTGATTATAGGGNTCGTTGTTCTTCNGGGAGAGTTTATAATAATTATTGTCCTGTGGATCACTTGGTAAATGAGATTGGGAAGCTGGTGAATAGTGGGGTTGTTGGAGAGAGTGGAAGTGGAAGGTTTTGGGTTATGGGTATTGCAACTTTCCAAGCTTACATGAGGTGTAAAAATGGACACCCATCACTGGAGACTCTTTGGGGTCTTCATCCTATTANTATTCCTGCTGGAAGCTTGCGCTTGAGTCTCATCACTGACAGTGGTCTACAAAATCAGCCCACCAACAAGGATAAAGCTGACAAAAGAACAAGCTGGCTATTACACGAAGGAGTGGGGGATGAGACCCAAGTTCGAAGCTTGCAGAGTAGTGCTTGTAACAGTGATTCCTCTACTTCAAGCCTTCCTGCATGGCTCCAACAGTACAAAAATGAGAATAAAGGAATCAACTCCTACAATGATCAGAACTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAACTCCATGTGTGGTTCAACCCAAAAACAACCCTATCTCTGTGACAAAACCCTCACATTATCCTCAGTAGTATCACCTTCTTCATCCACTTCAGGNTTCTCATATGAACAGCATCAGCAACAACAGCAACACTCACAAAGCAGCGACCACAACATCATTTGGATCTCCGAAAGTACTAGAAGAACCAACAACCCCAATTCCACTTCGGATTCTAGCGACCTCATGGAAATAGAACACGTCATCNCCACCAGCAACAACTTCAAGGAACTCAATTCAGAGAATATGAAAACTCTTTGCAACGCNTTGGACAAAAAGGTTCCGTGGCAGAAAGATGTAATACCAGAAATCGTGAGCACCGTTTTGCAATGCAGGTCTGGCTTAGTAAGAAGAACAGAGAAAGAGAATAATAATAAAGTGAAAGAAGACACGTGGCTGTTTTTCCAAGGTGCTGACGTGGAAGGCAAAGAGAAAATAGCAAGAGAGTTAGCTAGGTTTGTTTTTGGGTCCCACAGCAACAACTTTGTTTCAATATCACTGAGTAGTTTTGCATCTTCAACAAGATCTGGAGATTCAAGTGAGGATAATATTCAGTGTTGCAGAAACAAGAGAACAAGAGATGAACCAAGTTATTGCAGTTACATTGAGAGGTTCTGTGATGCAGTGTCTTCTAACCCTCATAGAGTGTTTCTAGTTGAGGACATTGAGCAAGCTGATTATTGTTCTCAACTTGGTTTCAAAAGGGCCATTGAGAGAGGAAGAGTTGAGGATTCAAATGGTGACGAGGTTGGGCTTTGTGATGCTATCATTATTCTAAGTTGTGAAAGTTTCAGTTCAAGATCAAGAGCTTGTTCTCCTAATAATTACAATTCGGTCAAACAAAGTCAAAGAGAAGAAAAGGAAGAGCATGTTGTTAATGTTGGTTTGGAGGAGACAAGTACTACAAGTCCTTGTGGTTCTTTGGATTTGAATATTCCCATTGATGATGATGAATGTTGTGATGTTGAGAATCGGTCTGTGGAGGATGATATTGGCCTTCTTGAATGTGTAGACAGAAAGGTTATCTTCAAAATTCAGGAATTATGAACAGAACTAATTTCAACAAAAACATCTAATTAATCTTTTATTCCCCCTTTATTTTCTTCTAGGCATCTCTTTATTCTCTGATCTGTTCATCATATGTCTTTGTATTCTGAGGCATTTCCTAGGGCTAGGGATGAACAAAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00898	42382	47141	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0019538 protein metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000898s00033187.1	PF02861.15	Clp_N	23	53	0.02
Glyur000898s00033187.1	PF02861.15	Clp_N	139	175	0.079

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.427
SRR1783600	control	7.338
SRR1783602	moderate drought stress	8.595
SRR1811619	moderate drought stress	8.500

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.277
DRR006520	Root Summer glycyrrhizin high producing strain	6.210
DRR006521	Root Winter glycyrrhizin high producing strain	0.459
DRR006522	Root Winter glycyrrhizin high producing strain	0.449
DRR006523	Root Summer glycyrrhizin low producing strain	6.970
DRR006524	Root Summer glycyrrhizin low producing strain	6.819
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.035
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.145

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.304
SRR2868004	Drought Stress (root)	11.888
SRR2967015	Control (root)	17.635

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.770
SRR9715740	Leaf	1.980
SRR9715741	Leaf	1.996
SRR9715739	Root	0.828
SRR9715742	Root	6.452
SRR9715743	Root	6.237

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.022
SRR8400027	Control - Root	6.099