Gene detail

Gene detail information of Glyur000896s00028925

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G35970.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein
NR	XP_004514995.1	0	PREDICTED: DNA-binding protein SMUBP-2-like [Cicer arietinum]
COG	YP_003369846.1	4.00E-82	AAA ATPase [Pirellula staleyi DSM 6068]
Swissprot	tr\|Q9FJR0\|RENT1_ARATH	2.00E-57	Regulator of nonsense transcripts 1 homolog
trEMBL	tr\|A0A072VHR8\|A0A072VHR8_MEDTR	0	DNA-binding protein SMUBP-2 {ECO:0000313\|EMBL:KEH40968.1}

Sequence

Transcript Sequence

>Glyur000896s00028925.1
AAAGATTCACTTCCCTTCCTCTCCTCGCCTCAAATGCATTTCACGGTTCAAATTCAAAACCCCTTCTCTATCCACCATGCGCATCACGAATAAATTNCCAAAAATAGCAAAAAAAATCTAAACTTTATATATTCCTAAGAGTCTCTGTAACCATTACTGATAGAGTTTTTTGAGAATTGCAGCNATGGAAACAACAGCAGCAACCACCACAACTTGTTTCTTCTGCGGTAGAATCCCAGCAAAAATGAAACTGGGTCACTCTTATTCTTACATTCCCTTCTCTTCTTTTTCTTCTTCTTCTTCTTCATTTGGGTCATTCTGCTTATTAACACGTAACAATTCCAACACCATCACATCCATGTGCTCTTTCTCCTCCTCAACAACAAAGCTTCCAAAAAGAAGAAGAAGAAGAAGGAAGAGCGTGTTGTTGCCAGTGCAAGAGGAACAACAACAGCAGCAACAAAGGGAAGAATCATTGGTACCCTTTGAGAATGAGAGCGTGGTGGTGGAGAAGCATAATCAGAATGGGGACCCAATTGGGTGGAAGGGACTTGGAAAAAGTGTGGTAAAGTGGATTCGTGAGAGCATGAAGGCGATGGCGTGTGATTTCGCCTATGCGGAGTTGTTAGAGGGAGAGGTTGAGTTTTTGGAGTTGAGGCAGAGGATGGGGCCTGGTCTTACTTTTGTGATACAGGCTCAGCCTTATCTGAATGCGGTTCCTATGCCACTNGGACTTGAGGTTATTTGCTTGAAGGCTTGCACACACTATCCCACTCTCTTTGATCACTTTCAGAGGGAATTGCGTGATGTTCTACAGGACATGCAGAGTAAGTCCTTGGTTCAGAACTGGCGGGAGACCCAGTCTTGGAAAATGCTTAAGGAGCTCGCCAATTCAGCTCAGCATAGGGCGGTTGCGAGGAAGACAACACAGCCCAAGACTGTCCAAGGCGTTTTAGGAATGGACATAGAAAGGGTCAAAGCAATACAGAACAGGATTGATGAGTTCACCAACCACATGTCTGAACTACTCCGTATCGAAAGGGATGCTGAATTGGAGTTTACTCAGGAGGAGTTGGATGCTGTTCCTAGACCAGATGATGCTTCTGATTCGTCGAAACCAATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGTGACACCATTTGTAATTTAAATGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGAAACCACCGGTTGCCACCTACTACTCTTTCACCTGGAGACATGGTTTGCGTGAGAACGTGCGACAGCAGGGGTGCAGTTACAACTTCTTGCATGCAAGGATTTGTGAACAATCTTGGGGATGATGGTTATAGTATTACTGTTGCTTTAGATTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAATGTGCGCATTGACCGTATTCAAGGCCTGGCTGACACACTTACCTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAAAATCCATCAATTTCTGTTGTTGCTACATTGTTTGGAGATGGAGAAGATGCCGCATGGCTTGAAGAGAATCATTTGGATGACTGGGCAGAAGAAAATTTGGACGGAATATTAGGAAGTGAATCCCTTGATGAGTCTCAGCAGAGAGCAATTGCACTGGGTTTGAACAAGAAGAGGCCGGTATTGGTTATCCAAGGGCCTCCTGGTACAGGCAAGACAGGTTTGCTCAAGCAACTTATAGCATGCGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAATATGGTTGAAAAGCTTTCAAGTGTTGGATTAAATATCGTACGGGCTGGAAATCCAGCTCGTATATCAAAAGCAGTGGGATCAAAGTCTTTGGGAGAAATTGTAAATGCGAGGCTTGCAAGTTTTCGAGAAGAGTATGAGAGGAAGAAGTCAGATTTAAGGAAAGATCTAAGACATTGTTTAAGGGATGATTCACTAGCTGCAGGAATACGCCTACTTCTGAAACAGCTGGGAAGGTCGCTGAAGAAAAAGGAAAAGCAGACCGTGAATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACCAATACCGGAGCAGCCGATCCTTTGATTCGAAGGCTAGATGCTTTTGACTTGGTTGTCATCGATGAAGCTGGACAGGCTATTGAACCCTCTTGCTGGATTCCTATGTTGCAGGGAAAGCGCTGTATCCTTGCTGGAGATCAATGCCAACTAGCTCCNGTTATATTTTCTAGAAAGGCCTTAGAAGGTGGTCTAGGAATATCTCTACTGGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACCAGGTTAACAACACAGTACCGTATGAACAATGTGATCGCTAGTTGGGCTTCAAAGGAGATGTATGGAGGATTGTTGAAGTCCTCNGAGACCGTCTTTTCTCATCTTCTCATGGACTCTCCTTTTGTTAAGCCAACATGGATAACACAGTGCCCACTGCTATTGCTTGATACTAGAATGCCATATGGAAGCCTGTCAGTTGGTTNCGAAGAGCATCTAGATCCGGCTGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGATATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAGCCCAACTGCTATTGTAGTGCAATCCCCTTATGTTGCACAAGTTCAACTTTTGAGGGACATGCTTGATGAGTTTCCAGAAGCTGCAGGTACCGAAGTTTCCACGATTGATAGTTTCCAAGGTCGAGAAGCTGATGCTGTGATTTTATCAATGGTACGATCAAACACATTGGGAGCTGTTGGATTCCTGGGGGATAGCAGAAGAATCAATGTGGCCATCACAAGAGCACGCAAACATCTAGCCGTAGTATGTGACAGCTCAACCATATGCCACAATACATTCCTAGCAAGACTTATGCGCCATATACGGCGCTTTGGTAGGGTGAAGCATATAGAACCGGGTAGTTTTGGTGGGTCTGGGCTTGGGATGAATCCAATATTACCTTCCATTAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00896	39963	47791	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000896s00028925.1	PF13086.1	AAA_11	494	711	5.00E-52
Glyur000896s00028925.1	PF13087.1	AAA_12	719	923	1.60E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.317
SRR1783600	control	0.339
SRR1783602	moderate drought stress	0.061
SRR1811619	moderate drought stress	0.069

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.702
DRR006520	Root Summer glycyrrhizin high producing strain	0.706
DRR006521	Root Winter glycyrrhizin high producing strain	0.166
DRR006522	Root Winter glycyrrhizin high producing strain	0.174
DRR006523	Root Summer glycyrrhizin low producing strain	2.411
DRR006524	Root Summer glycyrrhizin low producing strain	2.467
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.482

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.013
SRR2868004	Drought Stress (root)	4.107
SRR2967015	Control (root)	3.761

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.865
SRR9715740	Leaf	81.373
SRR9715741	Leaf	43.190
SRR9715739	Root	0.118
SRR9715742	Root	0.207
SRR9715743	Root	0.095

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.110
SRR8749028	MeJA induced 9h	2.676
SRR8749029	MeJA induced 9h	1.530
SRR8749030	Uninduced	0.941
SRR8749031	Uninduced	0.689
SRR8749032	Uninduced	0.897

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.331
SRR8400027	Control - Root	1.052