Gene detail information of Glyur000896s00028924 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17560.1 | 1.00E-38 | BolA-like family protein |
| NR | XP_004514994.1 | 2.26E-75 | PREDICTED: uncharacterized protein LOC101515532 [Cicer arietinum] |
| COG | YP_003075110.1 | 1.00E-09 | BolA family protein [Teredinibacter turnerae T7901] |
| Swissprot | tr|Q84W65|SUFE_ARATH | 2.00E-06 | SufE-like protein, chloroplastic (Precursor) |
| trEMBL | tr|I3SE91|I3SE91_LOTJA | 6.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:AFK38583.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00896 | 29693 | 35709 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000896s00028924.1 | PF01722.13 | BolA | 110 | 178 | 1.80E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.544 |
| SRR1783600 | control | 47.040 |
| SRR1783602 | moderate drought stress | 34.678 |
| SRR1811619 | moderate drought stress | 34.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.718 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.352 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.637 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.912 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.409 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.300 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 329.593 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 327.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.183 |
| SRR2868004 | Drought Stress (root) | 27.462 |
| SRR2967015 | Control (root) | 23.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 76.501 |
| SRR9715740 | Leaf | 94.192 |
| SRR9715741 | Leaf | 73.865 |
| SRR9715739 | Root | 19.672 |
| SRR9715742 | Root | 22.761 |
| SRR9715743 | Root | 23.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.607 |
| SRR8749028 | MeJA induced 9h | 10.650 |
| SRR8749029 | MeJA induced 9h | 17.962 |
| SRR8749030 | Uninduced | 10.122 |
| SRR8749031 | Uninduced | 5.031 |
| SRR8749032 | Uninduced | 4.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 34.502 |
| SRR8400027 | Control - Root | 36.575 |