Gene detail

Gene detail information of Glyur000894s00023639

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G44635.1	0	minichromosome maintenance (MCM2/3/5) family protein
NR	KEH20801.1	0	minichromosome maintenance (MCM2/3/5) family protein [Medicago truncatula]
COG	YP_003649354.1	2.00E-124	replicative DNA helicase Mcm [Thermosphaera aggregans DSM 11486]
Swissprot	tr\|F4KAB8\|MCM6_ARATH	0	DNA replication licensing factor MCM6
trEMBL	tr\|A0A072TUF1\|A0A072TUF1_MEDTR	0	Minichromosome maintenance (MCM2/3/5) family protein {ECO:0000313\|EMBL:KEH20801.1}

Sequence

Transcript Sequence

>Glyur000894s00023639.1
GAGCGAGAAGTGGCAACTGATAGAGAAGCCAAATCCCAANCTCCAAACACTGAAAGGAAGGGAAGGTAGAGTAGGGTTCGGAGTGAGAAGAACAAGGCAGAGAAGAAGCATCACAGGCGAAGATGGAAGCATATGGCGGGTACTTGGTGGATGAGAAAGCCGTTAGGGTCGAGAACGCTTTCTTAGAATTTCTCAAAAGCTGCAGATCTGGGCAACGGAACGAGCTCTATTACGAAGCGGAGATAGAAGTGATGAGAGCCAACGAATCCAACACCATGTTCGTCGATTTCGATCACGTCATCAGACACAGCGATCTCCTTCAGAAAGCTATCTCCGATGAATATTTGAGGTTTGAACCTTATTTGCAGAACGCCTGCAAGAGGTTCGTTACGGAGCTTAAGCCAACCTTCATATCCGACGATAACCCTAACAAGGACATCAACATTGCCTTCTACAACATTCCAGTTGTCAAGCGGTTAAGGGAATTGACTACATCAGAGATTGGAAGGCTTGTGTCNGTGACAGGAGTGGTAACAAGAACAAGTGAGGTTCGACCAGAGCTTCTAGCAGGGACTTTCAAGTGCCTAGAATGTGGCGGGATTGTAAAGAATGTGGAGCAGCAATTCAAGTATACTGAGCCAATTATCTGTTTAAATGCAACTTGTAACAAACGAACGAGGTGGGCACTGCTGCGCCAAGAGAGCAAATTTACTGATTGGCAGAGGGTTAGAATGCAGGAGACATCCAAAGAGATACCTGCNGGCTCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATNGTGGAACAGGCCAGGGCTGGTGACACGGTGATTTTTACGGGTACTGTAGTTGTTATACCTGACATATTGGCATTGGCATCCCCTGGGGAGAGATCAGAATGCCGTAGGGAATCTTCTCAACGCAAGGGTTCTACAGCTGGGAATGAAGGTGTGAGGGGCCTTAGGGCCTTAGGAGTCAGAGACCTCTCNTATCGTCTAGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAACAGACATCAGGAATAGAAAGAAGGATGCCGATGAAGATGATCAGCAATTTACTGCACAGGAACTGGATGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTTGTTGAGAGTGTTGCTCCAACAGTTTTTGGTCATGCAGATATAAAGCGAGCAATCCTTCTTATGCTTTTGGGTGGTGTACACAAATCTACCCATGAAGGCATCAGCCTTAGAGGGGACATAAACGTTTGTATTGTTGGAGATCCCAGCTGTGCGAAGTCTCAATTTCTTAAGTATACTTCAGGCATAGTTCCTAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGCTTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCGGATAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGACATCAGAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCCATTCTTGCCGCTGCCAACCCTGCTGGGGGACGGTATGATAGATCCAAACCACTGAAGTATAATGTGGCTCTTCCNCCGGCTATACTTTCAAGGTTTGATCTTGTATATGTTATGATTGATGANCCAGACGATCAGACAGATTACCACATAGCTCATCATATTGTGCGAGTCCATCAAAAGCGTGAAGCTGCTCTTACTCCAGCATTCACTACAGCAGAACTGAAGCGTTATATAGCTTATGCAAAAACTCTTAAACCAAAGCTCACGTCAGATGCCAGAAAACTACTAGTAGAATCTTATGTTGCTCTCCGTAGGGGTGATGCAAATCCTGGGAGTAGGGTTGCATATCGTATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCGGAGGCCATTGCACGGAGTCATTTGGAAAAACAGGTACAACCTCATCATGTTGGTTTAGCAGTAAAACTTCTAAAAACATCCATAATAAGTGTGGAGAGCGAGATTGATCTGTCTGAGTTTCAAGAACCGAACCGGGATGACAGCACTGATGCTGCTGATGGTCAAGCGGGAAACACTACAGCTCAGCAAGCTGCTGGAACTGATGAAAATCCAGCAGATGGATCTAACCCCCAACAAGGGAAGAAACTTGTTATAAGTGATGAATATTTTCAGAGAGTTACCAGGGCCCTTGTCATGCGTCTTAGACAGCATGAAGAGACTGTTGCGCAAGAAGGAACTGGTTTGGCTGGGATGAGGCAACGAGATCTGATTCAATGGTATGTAAGCCAGCAGAATGAGAAAAACAGTTACAGTTCCGTGGAGGCGGCAGCAGCAGAGATTTCCAAGATTAAAGCAATTATAGAGAGTTTAATTCGAAGAGAGGGCCATTTGATAGTGGTGGATGATGGTAGGCANGCAGCAGCAGAAGCTGAGGGTGCAGAGCAAACAGCACCGGTCTCTAGAAATGATCGAATTTTAGCCGTGGCTCCTAATTATGTCATTGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00894	75221	80483	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02542	MCM6	EC:3.6.4.12	DNA replication	map03030
			DNA replication	map03030
			Cell cycle	map04110
			Cell cycle	map04110
			Cell cycle - yeast	map04111
			Cell cycle - yeast	map04111
			Meiosis - yeast	map04113
			Meiosis - yeast	map04113

Gene Ontology

biological_process

GO:0006260 DNA replication

GO:0006270 DNA replication initiation

cellular_component

GO:0005634 nucleus

GO:0042555 MCM complex

molecular_function

GO:0003677 DNA binding

GO:0003678 DNA helicase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000894s00023639.1	PF14551.1	MCM_N	17	135	1.50E-19
Glyur000894s00023639.1	PF00493.18	MCM	331	653	1.20E-133
Glyur000894s00023639.2	PF14551.1	MCM_N	17	135	1.60E-19
Glyur000894s00023639.2	PF00493.18	MCM	331	653	1.30E-133

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.309
SRR1783600	control	6.333
SRR1783602	moderate drought stress	3.571
SRR1811619	moderate drought stress	3.484

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.327
DRR006520	Root Summer glycyrrhizin high producing strain	9.611
DRR006521	Root Winter glycyrrhizin high producing strain	10.070
DRR006522	Root Winter glycyrrhizin high producing strain	9.891
DRR006523	Root Summer glycyrrhizin low producing strain	6.853
DRR006524	Root Summer glycyrrhizin low producing strain	6.780
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.549
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.445

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.796
SRR2868004	Drought Stress (root)	13.801
SRR2967015	Control (root)	13.842

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.559
SRR9715740	Leaf	0.135
SRR9715741	Leaf	1.373
SRR9715739	Root	0.866
SRR9715742	Root	3.710
SRR9715743	Root	3.285

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.257
SRR8749028	MeJA induced 9h	26.269
SRR8749029	MeJA induced 9h	12.475
SRR8749030	Uninduced	0.606
SRR8749031	Uninduced	0.496
SRR8749032	Uninduced	0.277

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.899
SRR8400027	Control - Root	16.959