Gene detail

Gene detail information of Glyur000894s00023638

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20260.3	3.00E-39	plasma-membrane associated cation-binding protein 1
NR	AFK34640.1	3.06E-79	unknown [Lotus japonicus]
Swissprot	tr\|Q96262\|PCAP1_ARATH	6.00E-50	Plasma membrane-associated cation-binding protein 1
trEMBL	tr\|I3S2Z8\|I3S2Z8_LOTJA	1.00E-79	Uncharacterized protein {ECO:0000313\|EMBL:AFK34640.1}

Sequence

Transcript Sequence

>Glyur000894s00023638.1
GTTTTTTATAAAAAAAATAGAGAGGGTATATGTGTCATTTAAACATTATTCAAGAGAGGTGGGTGCAATTTTCCTTTTTATTTATATGTACGTATATGTGTGTTTGTGGCACTTAATTTGGAGAGACAAGTGGCTGAGTCAGTTGCGTTGAGCTCGACTTTGATAGTTTCATTTAGTTAAGGTTAAGGACCACAAGGGAGACACAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAAGAGAAAGAGAGGGAGATTTGGAATTGAAGCACAAGATGGGGTATTGGAAGTCTAAGGTTCTTCCCAAAATCAAGAAGGTGTTTGAGAAGAATGGTACCAAGAAAACTGCTGCTGCTGAGGCCTCCAAGTCCTTTGATGAGTCAAAGGAGGAATACAATAAAGTGTTTGAAGAAAAGAAGACTGAACTTCAAACAAAAGTACTTGAAGTATATGAGGCTTCACCAACTGAAATCAAGAGTTTGGTCAAAGAACGTGATGAAGCAGGGCTGAAGAAGAACTCCGCAGCAGTTCACAAATTCATAGAAGAACTTGTGAAAATTGATTTCCCTGGATCAAAGGCAGNATCTGAAGCATCTTCAAAGTTTGGACCAGCCTTGGTTTCAGGCCCAGTTTTCTTTGTTTTTGAGAAGGTATCAACTTTCATAGTCACAGAAGAGAAAGAGAAAGTGGAATCAGGTGAAGGTGAAGGTGAAGCCCCTCCTAGTACAGAAACTAAAACAGAAGAGGAAACAAGTGCTGCTGTTAAAGAGAGGGAGATAGTGGTTGAAGAAGAAAAAAAGGAAGAGGAGGAGAAACCACAAGTAGTGGTAGAGACTACAAGTGAGAAAGTTATTGAATCTGAACAGCCACCTAAGGTGGAAGAACAGCCTGCAACTGATGAGCCTGCTAAACAGGAAGAGAAACCTNCTGAAGTACCAGCTGCTGCAGCAGCAGAACCACCAAAGCCTTGACAATATTTCCAATTCTCCTAGCTAGTAGCAGTGGTAGCTGCTACTTGCTGATCCAGAACATAATATATATGTGTATTAGTTTGCATATATACTCAAAATTGTTACACACCCAATTATCTCTTATTCTTTTTATAGTTCTGTAATTGATTGATTTGTGTTTGCTTATTAGTTTGATATGTTGGAGATTTGATTATATAAATGTGCACGTGAATTAATGTTATATGGTGAATCAATCAATTTGTAATTTTTCAATTTTCATTTCACAGACAACAAGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00894	71636	73267	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0051716 cellular response to stimulus

cellular_component
GO:0046658 anchored component of plasma membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000894s00023638.1	PF05558.7	DREPP	1	231	7.10E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.562
SRR1783600	control	4.079
SRR1783602	moderate drought stress	23.221
SRR1811619	moderate drought stress	23.710

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.048
DRR006520	Root Summer glycyrrhizin high producing strain	15.870
DRR006521	Root Winter glycyrrhizin high producing strain	90.057
DRR006522	Root Winter glycyrrhizin high producing strain	87.210
DRR006523	Root Summer glycyrrhizin low producing strain	122.834
DRR006524	Root Summer glycyrrhizin low producing strain	122.977
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.351
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.333

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	275.722
SRR2868004	Drought Stress (root)	353.554
SRR2967015	Control (root)	322.473

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	70.571
SRR9715740	Leaf	98.426
SRR9715741	Leaf	136.713
SRR9715739	Root	2.384
SRR9715742	Root	12.813
SRR9715743	Root	12.411

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.629
SRR8749028	MeJA induced 9h	5.007
SRR8749029	MeJA induced 9h	2.433
SRR8749030	Uninduced	0.256
SRR8749031	Uninduced	0.912
SRR8749032	Uninduced	1.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.480
SRR8400027	Control - Root	59.374