Gene detail

Gene detail information of Glyur000894s00023632

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G21420.1	1.00E-48	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004488237.1	3.34E-90	PREDICTED: protein SRG1-like [Cicer arietinum]
COG	YP_003209425.1	5.00E-12	hypothetical protein CTU_10620 [Cronobacter turicensis z3032]
Swissprot	tr\|Q39224\|SRG1_ARATH	6.00E-27	Protein SRG1
trEMBL	tr\|A0A072V5M6\|A0A072V5M6_MEDTR	3.00E-88	2OG-Fe(II) oxygenase family oxidoreductase {ECO:0000313\|EMBL:KEH37309.1}

Sequence

Transcript Sequence

>Glyur000894s00023632.1
ATGGCTCCAGTACCCATTTCTACCCTCAACGTTGGGCACATTGATGATGTCCAAGAACTAAGAAGAACCAAGCCAAGTACAATTCCTCAAAGATTTGTAAGAGACATGACAGAAAGACCAAAACTTGTTACTACTGCTCCTCTTTCCCAACCACAACCACACAGTGACATTCCTGTCATTGATCTCTTTAAGCTTAGTAAAGGGACNAAAGAGGAAGTCCTCGCTCAACTTTGCAACCTTTCAACTGCTTGTGAGGAGTGGGGATTTTTTCAGGTGATTAATCATGAGATTGACCTCANTCTGTTGGAGAGCATAGAGAACATGAGCAGGGAGTTTTTCATGCTACCTTTGGAAGAGAAACAGAAATACCCAATGGCTCCAGGCACAGTCCAAGGTTATGGACAGGCTTTTGTTTTCTCAGAGGACCAGAAGCTGGATTGGTGCAACATGTTTGCTCTAGGAATTGAACCTCACTATGTTCTTACAAATGGAAAATACAAGAGTGTGGAACATAGAGCTGTGNCTCATGAGGAGAAAGATCGACTCTCAATTGTGACATTCTATGCTCCCAGCTATGAAGTAGATCTTGGACCAATGCTAGAATTTGTGGATGAAAAGCACCCATGCAAGTATAGAAGATACAATCATGGAGAGTACAGTAAACACTANGTGACAAACAAGCTACAAGGAAAGAAGACCCTGGACTTTGCCAAGATTGAAATCAGAAACAATACAAACTAGGAAAGTCTCACTCAGATCCCCCCAACTAGCTAGGAGGAGTACTATAATTAGACTATCGAGTATATATAAAAAATGAACCACATAAAAAGTATCAAGGTCAAGCTTCTCAATTCTTTTTTTATTGAAAAATAGGCAAAATTGGGNGATGTAGAAGAGTGTGATTGTGGTCACATACAGAACACTCACTGTTCCTATTCTAAATATGTATATGCTAGCTAGCTTTCAATGGAAACTAGGGACATCTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00894	29707	31588	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000894s00023632.1	PF14226.1	DIOX_N	57	157	1.90E-27
Glyur000894s00023632.1	PF03171.15	2OG-FeII_Oxy	159	190	0.0002

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.581
SRR1783600	control	6.711
SRR1783602	moderate drought stress	6.456
SRR1811619	moderate drought stress	6.716

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.871
DRR006520	Root Summer glycyrrhizin high producing strain	7.784
DRR006521	Root Winter glycyrrhizin high producing strain	0.113
DRR006522	Root Winter glycyrrhizin high producing strain	0.109
DRR006523	Root Summer glycyrrhizin low producing strain	3.302
DRR006524	Root Summer glycyrrhizin low producing strain	3.288
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.115
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.221

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.223
SRR2868004	Drought Stress (root)	27.291
SRR2967015	Control (root)	11.135

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.690
SRR9715740	Leaf	0.539
SRR9715741	Leaf	0.573
SRR9715739	Root	0.456
SRR9715742	Root	4.353
SRR9715743	Root	3.281

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.067
SRR8749028	MeJA induced 9h	0.101
SRR8749029	MeJA induced 9h	0.060
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.256
SRR8749032	Uninduced	0.028

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.992
SRR8400027	Control - Root	10.382