Gene detail information of Glyur000893s00030778 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G22880.1 | 7.00E-22 | DNA repair (Rad51) family protein |
| NR | KEH43775.1 | 1.30E-26 | meiotic recombination protein DMC1, putative [Medicago truncatula] |
| COG | NP_069826.1 | 2.00E-06 | DNA repair and recombination protein RadA [Archaeoglobus fulgidus DSM 4304] |
| Swissprot | tr|Q96449|DMC1_SOYBN | 4.00E-28 | Meiotic recombination protein DMC1 homolog |
| trEMBL | tr|A0A072W0E3|A0A072W0E3_MEDTR | 5.00E-27 | Meiotic recombination protein DMC1, putative {ECO:0000313|EMBL:KEH43775.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00893 | 70207 | 73832 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000893s00030778.1 | PF08423.6 | Rad51 | 63 | 94 | 3.00E-05 |
| Glyur000893s00030778.2 | PF08423.6 | Rad51 | 63 | 94 | 4.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.003 |
| SRR1783600 | control | 0.003 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.994 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.744 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.036 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.974 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.642 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.817 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.227 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.667 |
| SRR2868004 | Drought Stress (root) | 6.369 |
| SRR2967015 | Control (root) | 6.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.997 |
| SRR8749028 | MeJA induced 9h | 3.967 |
| SRR8749029 | MeJA induced 9h | 2.633 |
| SRR8749030 | Uninduced | 0.777 |
| SRR8749031 | Uninduced | 0.562 |
| SRR8749032 | Uninduced | 0.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.001 |
| SRR8400027 | Control - Root | 0.081 |