Gene detail

Gene detail information of Glyur000892s00021924

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18370.1	0	C2 domain-containing protein
NR	XP_004512919.1	0	PREDICTED: synaptotagmin-4-like [Cicer arietinum]
Swissprot	tr\|A0JJX5\|SYT4_ARATH	3.00E-22	Synaptotagmin-4
trEMBL	tr\|G7KN36\|G7KN36_MEDTR	0	Plant synaptotagmin {ECO:0000313\|EMBL:AES76695.1}

Sequence

Transcript Sequence

>Glyur000892s00021924.1
AGACAGAAGAAATTATAGTGCTTTTTCAATTGATTCATTTCAGCATATGGTACCGTTCCCAATTTGTTCAGTAACAGTAACAGTTTAATTCAATTCCTGACAAGAAAAAACTGTCCGTTNTGTAACAACAAGGAGTTTTCCATAATCATTCTCTTCAGCTGACTTTTCCACTTCTCTCTTTCTCTCTCTATACCTTTTCCCAGCTTCTAGTAGTAACAACCCTTCAAAGTTCAAAACTTGTCAACTCCCAAAACATTTGCTTGATGCCCATTTTTCCTAGGATCTCCTTTTTTTCATCTTCTTCCCTTTTCCTTTTCAAACATTAGCTTACCCCTTTGAGGCCTTGACCCCAGGTCTTTGTTTTTCTCTCTTGTTACAGCTATGGATGGGGAATGTTGATATTGGGTGAAACCATCACAACCCACAAATTTATATACAAAAAAGTTTCCATCTTTTTTATTTTCTTAGATTAATTTGAGTGGATTTTGGTGCAAGCAATGAGTAGAAAGAAAAGGGTATTTTCCATTGATATTGAAGAGGCTGCTGTGGAGTTCTTCAACCATCTCTTGAAGGAGAAGCCCAGGATTCCATTCTTCATACCACTGATTCTGGTTGCTTGGGCTATTGAGAGATGGCTCTTCTCTTTCTCCAATTGGGTGCCTCTTGCACTTGCTGTGTGGGCAACTATTCAGTATGGGAGATACCAACGCAAACTACTAGTGGAGGACTTGGATAAGAAATGGAAGAGAATCATACTCAACGTCTCGCCCATCACACCATTGGAGCACTGTGAGTGGCTAAATAAATTGTTGACAGAAGTCTGGTCCAACTATTTTAACCCCAAATTCTCAACAAGGTTATCAGCTATAGTTGAGAAACGTTTGAAGCTCCGGAAACCAAGATTTCTTGAAAGAGTTGAGCTGCAGGAGTTTTCACTAGGATCATGCCCTCCTAGCTTGGCCTTGCAAGGGATGCGGTGGTCAACTATTGGTGATCAGCGAGTCATGCATCTTGGTTTTGATTGGGACACAAATGAAATGAGCATTTTGGTGCTTGCTAAGCTTGCGAAGCCATTGATTGGAACTGCGCGAATTGTGATTAACAGTCTTCATATCATGGGTGAACTTCTCGTTACACCAATTCTAGATGGAAAAGCGCTTTTGTATTCGTTTGTATCAGCTCCTGAGGTGAGAATAGGAATTGCCTTTGGAAGCGGTGGAAGCCAGTCCCTTCCTGCTACTGAGTGGCCCGGTGTTTCTTCATGGCTGGAAAAACTTTTTACTGACACCTTGGTTAAAACCATGGTGGAACCTCGGCGACGCTGTTTCACTTTGCCCGCAGTTGATCTAAGGAAAAAGGCTGTTGGGGGCATTGTATATATCAGAGTGATTTCAGCAAGTAAACTTTCCAGGAGTTGCTTCAAGGCGGCATCCAGAAGGCCACAAAATGGATCAACCAATGGTTCTTCTTCAGAAGACAATTTTGATGACAAGGACCTACATACATATGTAGAGGTAGAAGTCGAGGAATTAACGAGGAGAACAGATGTCAGACTGGGTTCAACCCCTAGATGGGATGCACCATTTAATATGGTTTTGCATGATAACACAGGAAATCTTCGTTTCAATCTTTTTGAGTATCGCCCCGACAATGTGAAGTGTGACTATCTAGCAAGTTGTGAAATCAAGTTGAGGCATGTTGAAGATGATTCAACGATAATGTGGGCAATAGGACCGGATTCCGGGGTCATAGCAAAGCAAGCACAATTTTGTGGCGAGGAAATTGAAATGNTTGTCCCATTTGAGNGGGCCAACTCTGGAGAGTTGAAGGTGAGCATTGTAGTAAAAGAGTGGCAATTTTCTGATGGTTCACATAGCTTGAGCAATCTCCGGACCAGCAGCTCTCAGCAGTCACTTAATGGATCATCAAATCTTCAGTTAAGAACCGGAAGGAAACTTAACGTAACTGTCGTGGAAGGAAAGGATCTTGCTGCAAAAGACAAACCTGGAAAATTTGACCCATACATTAAATTGCAGTATGGAAAGGTTATACAGAAAACAAGGATTTCTCATACTCCAAATCCTGTTTGGAACCAGACATTTGAATTCGATGAGATCGGTGGTGGTGAATATTTAAAAGTAAAAGGCTTTACTGAGGAAACTTTCGGAGACGAAAACATCGGTAGTGCACAAGTAAATTTGGAAGGACTAGTTGATGGCTCAGTCAGGGATGTATGGATCCCTCTTGAAAGAGTGCGTTCCGGAGAATTAAGACTTAAAATAGAAGCAGTTAGGGTGGATGACCAAGAAGGATCAAAGGGTTCAGGCTCAGGAAATGGTTGGATAGAACTTGTTCTGATTGAAGGGAGGGATCTTGTTGCTGCCGATCTCCGAGGCACGAGTGATCCATATGTGAGGGTACAGTATGGAAACTTTAAGAAAAGGACAAAGGTTATATACAGAACTCTTAACCCTCAGTGGAACCAGACACTAGAGTTCCATGATGATGGAAGTCCCCTGGTACTTTATGTCAAGGATCATAACGCGTTACTACCGACAGCAAGTATAGGTGAATGTGTTGTAGAATATCAAAGGTTGCCCCCAAACCAGATGGCTGACAAGTGGATACCTCTTCAAGGGGTGAAAAGGGGTGAGATTCACATCCAAATCACTAGAAAGGTTCCAGAGATGCAGAAGAGGCAAAGTCTAGACTCTGATCCTTCCTTGAGTAAATTACACCAAATTCCTAGCCAGATAAAACAGATGATGCTCAAGTTCAGATCTTTAATAGAGGATGGAAATCTTGAAGGACTCTCCACAACATTGAGTGAGCTAGAAACTTTAGAGGATACACAGGAAGGGNATATAGCCCAGTTGGAGACTGAGCAAATGCTTCTCCTCAGCAAAGTAAGGGAACTTGGCCAAGAGATCATTAATTCTTCTCCTTCCCTAAGCAGAAGATCCTCTGGAAGTGTAAACTGACCCTTTTGTATTTAATATTTTTCCCATGCACAATTTTGCTTATGGGAAACATCATCATGGACAGGTTTTGTAAATGTTTTCAGACTAGCTTGTCTTCTTAATTATACCATACAACACAACATATTATAGCTTGTACATGGTTATTTGATCAATTTTTTGCTTTAGTGAAGTTCCTTTCTGGGGAGGGGTATGCATAATGAAAGAGGAAGGAACTGCTGTATTTACACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00892	100465	107336	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000892s00021924.1	PF00168.25	C2	296	384	0.15
Glyur000892s00021924.1	PF00168.25	C2	487	564	1.00E-14
Glyur000892s00021924.1	PF00168.25	C2	618	693	8.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.496
SRR1783600	control	11.573
SRR1783602	moderate drought stress	12.826
SRR1811619	moderate drought stress	12.735

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.428
DRR006520	Root Summer glycyrrhizin high producing strain	10.208
DRR006521	Root Winter glycyrrhizin high producing strain	8.762
DRR006522	Root Winter glycyrrhizin high producing strain	8.445
DRR006523	Root Summer glycyrrhizin low producing strain	10.758
DRR006524	Root Summer glycyrrhizin low producing strain	10.938
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.293
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.473

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.474
SRR2868004	Drought Stress (root)	40.691
SRR2967015	Control (root)	40.290

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.374
SRR9715740	Leaf	20.085
SRR9715741	Leaf	31.917
SRR9715739	Root	1.951
SRR9715742	Root	10.364
SRR9715743	Root	8.980

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.683
SRR8749028	MeJA induced 9h	9.234
SRR8749029	MeJA induced 9h	7.434
SRR8749030	Uninduced	6.696
SRR8749031	Uninduced	12.017
SRR8749032	Uninduced	5.132

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.661
SRR8400027	Control - Root	25.309