Gene detail

Gene detail information of Glyur000892s00021918

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73850.1	1.00E-107	Protein of unknown function (DUF1666)
NR	KHN32044.1	0	hypothetical protein glysoja_034907 [Glycine soja]
trEMBL	tr\|K7L0K1\|K7L0K1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G10231.1}

Sequence

Transcript Sequence

>Glyur000892s00021918.1
ATGTTGACAAGAGAGAAGGAAAAGATGGAGTTGCTTTGCTTAGTGGAGTCCCTCTTGGAGTTCAATTTGGAGCAGCCACAAAGAAAATGCCATGTTCCAAAGAAGAAGCTCTTGTTAGGCTCTTCTACAATGCCTCAAGCTCTTTCCAGCTTCTCTTCCTCTTCCTCTTCTCCTCAATCACTTTGCTTCTCAAGTTCTCAAACTTCATTAGCAGCTACACCTTATTCCAAAGAAGAAGAAGAAGAGATTCAAGAAGGTTATTGTTATGAGGATTCTATTGAGAGAGATCATTTAGTAGCAGATATCATTTGTGGTGGAGAAGCCCTTTTGTTTCTACACAACAACAAGGAGCCTCAAAGGACTCATTATTCTTCTTCTCAGGAATTATTCATAAGCCCCCAAGATAGCTTTGTTGAAGAAGACTCAGAAGAGAAATATTCAACAGAAACCTTATCTGTTCACAAGTCACCACTGGTTTCAGATTTTGAGACAGAAGCAGAAGCAGCTGAAGAAGGAGATGCAGGAGATGCTGATTCTGTTCCAAATTCTGTCCCAGTTGAAAGCAGGCCCACTTCTCCCATCACACTAAACCTATACAAAAGTGACTTGGTAGTGGATAAAGATCATCTTGTTGATGTTGGAATTATCAGAAACAAGAAAGTGGAGGATGCAAAAATCAGAAGAGATGATGAGAGGTTCTTTGTCCTTGCTCCTACCACCACCCACTTGGAGAGTACTACTAAGAAGCTGATCATTGAAGAGAAAGATGATGAAGAGATATACGGTGATTCATGCACTGTTGGGTCCACATCTAAGAGCTCCTCTGATTGGAGAAGCTCCATCAATTGCAGGGATTCAGGAACTGATGACCCTTTTTCTTCTTCATCAAGAAGAAGTTGCCCCAAATGGGAATCATACACGGTTTTTCAGAAATATGATGAGGAAATGTCATTCCTAGACAGGATTAGCGCACAGAAACTTCATGAAACTGAGCGAATTGTGTACAAGATTTCAACAATGAATAAAAAACCAGNTGATATCCATCACAACCCATACCATGAATTGGAGGCAGCATATGTGGCACAAATTTGCATAACATGGGAGGCACTTAATTGGAACTACAAGAATTTCCAATCCAAACGAGCCTCACGTCGTGATGTTGATGTTGACGTGGGTTGTCCTGCCACAATTGCACAGCAATTCCAACAATTTCAAGTTCTGTTGCAGAGATATGTAGAGAATGAGCCTTATGAGCATGGTAGGAGACCTGAGATCTATGCTAGGATGAGGCATTTGGCTCCAAAATTGCTCCTAGTCCCTGAATATCGAGAATCAGATGATGATCAGAAGGACAGTGGGTTTAACTCTAGAATATCGTCAGCTTCGTTTCTCGTGATAATGGAAGATGGAATCAGAACATTCATGAGTTTCCTGAAGGCTGATAAAGAGAAACCATGTCAGATCCTTGCATCTTACTTTCGGAAAAACCGAAGAGGCTTGGTTGATCCAACACTTATCCGGCTTATCAAGAAAAAGAAGATGAAAGTTAAAGATCTTCGTCGTTCCCATAAATGCTTGAGGAAGAGAAGGTTGAAGGTGGAAGAAGAGATGGAGATTTTGATGGCACTCATAGACCTGAAGGTTGTGTCAAGGGTGTTGAGAATGAGTGACATGAGTGAAGAACAATTGCATTGGTGTGAAGAGAAGATGAGCAAAGTGAGAGTCATGGATAGGAAGCTTCAAAGAGATTCCAATCCACTTTTTTTCCCAGCACATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00892	68591	73185	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000892s00021918.1	PF07891.7	DUF1666	352	590	6.10E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.043
SRR1783600	control	5.083
SRR1783602	moderate drought stress	4.370
SRR1811619	moderate drought stress	4.488

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.605
DRR006520	Root Summer glycyrrhizin high producing strain	3.648
DRR006521	Root Winter glycyrrhizin high producing strain	2.034
DRR006522	Root Winter glycyrrhizin high producing strain	1.851
DRR006523	Root Summer glycyrrhizin low producing strain	5.818
DRR006524	Root Summer glycyrrhizin low producing strain	6.080
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.097
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.051

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.404
SRR2868004	Drought Stress (root)	21.200
SRR2967015	Control (root)	29.891

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.415
SRR9715740	Leaf	3.976
SRR9715741	Leaf	3.795
SRR9715739	Root	0.264
SRR9715742	Root	7.225
SRR9715743	Root	6.592

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.706
SRR8749028	MeJA induced 9h	1.962
SRR8749029	MeJA induced 9h	1.123
SRR8749030	Uninduced	0.761
SRR8749031	Uninduced	0.234
SRR8749032	Uninduced	0.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.871
SRR8400027	Control - Root	4.422