Gene detail information of Glyur000892s00021913 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02550.1 | 3.00E-22 | LOB domain-containing protein 41 |
| NR | XP_003528948.1 | 3.82E-54 | PREDICTED: LOB domain-containing protein 41-like [Glycine max] |
| Swissprot | tr|Q9M886|LBD41_ARATH | 4.00E-29 | LOB domain-containing protein 41 |
| trEMBL | tr|I1KIX1|I1KIX1_SOYBN | 1.00E-54 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G10180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00892 | 42504 | 44069 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000892s00021913.1 | PF03195.9 | DUF260 | 4 | 79 | 1.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.568 |
| SRR1783600 | control | 18.489 |
| SRR1783602 | moderate drought stress | 2.013 |
| SRR1811619 | moderate drought stress | 1.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.244 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.552 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.191 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.829 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.098 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.782 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.846 |
| SRR2868004 | Drought Stress (root) | 1.871 |
| SRR2967015 | Control (root) | 4.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.403 |
| SRR9715740 | Leaf | 10.676 |
| SRR9715741 | Leaf | 27.354 |
| SRR9715739 | Root | 123.500 |
| SRR9715742 | Root | 86.483 |
| SRR9715743 | Root | 90.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 188.064 |
| SRR8749028 | MeJA induced 9h | 130.490 |
| SRR8749029 | MeJA induced 9h | 67.920 |
| SRR8749030 | Uninduced | 17.909 |
| SRR8749031 | Uninduced | 5.529 |
| SRR8749032 | Uninduced | 6.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.534 |
| SRR8400027 | Control - Root | 44.171 |