Gene detail

Gene detail information of Glyur000892s00021910

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25440.1	3.00E-50	B-box type zinc finger protein with CCT domain
NR	AEF12205.1	3.46E-146	CONSTANS-like zinc finger protein [Glycine max]
Swissprot	tr\|Q8RWD0\|COL16_ARATH	3.00E-82	Zinc finger protein CONSTANS-LIKE 16
trEMBL	tr\|K7M1Z6\|K7M1Z6_SOYBN	1.00E-146	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G33420.5}

Sequence

Transcript Sequence

>Glyur000892s00021910.1
CTTGATTTTACAAACCTTGCAAAGGAACCAAGTGAGAACAAGATAAGACCTTCACAAACACTGTCAAGTCCCAACACACAATAACATAAAACAATAACTGAATTTGAATCATTTGGGTTATTGTGGTTATCTAAATAAATACAAGAACACCCCTCCTTCCCTCCCTCAACATTCCTTTTGATTCCTTGTTGGTAGTAACCAACCAAACCCCAAACCAATTAACCATTTTATACATCAAAATTCACTCTTTGATATTCAACCAAAAGCCAATTCNATATGACCAAGGAAATGAAAGAAGCAGAAGCTGCAAGTGCAAGTGCATTGGGAGCAAAAACAGCAAGAGCATGTGATAGCTGCGTAGTGGTTCGAGCAAGGTGGTATTGTGCAGCTGATGATGCTTTCCTCTGCCATGGCTGTGACACTTTGGTTCACTCTGCTAACCAATTAGCCAGCAGGCATGAAAGGGTTAGGCTTCAAACTTCTTCCTCAAAACTCAACCACTCATCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCATAAAAACAAACACTCCTTGGTGCAACAACAACAAAAAGAAGAAGAAAAAGAAAAAGAAGTGTTTTTGATCAATAACACCAATACCCTTCTACCCCTTGTGCCTGAGTTAGGGAATGAAGAACCATTTCTACTTGAGGATGATGAGAATAATGAGGAGCAACTTCTCTGTCGTGTGCCTGTGTTTGATGGTGTTGTTGAAGAAGAAGCCTTTGATTTGGACAACTTTTCTTCTGAGTTTCTACCATCAGATATGGACCTTGCTGAGTTTGCTGCTGATGTTGAAGGCTTACTTAATGTTGATCANGAGGGTTCATATTCTGGCCATGATGATGTGAAAAAAGGAGTAGAAGAAGATGCATGTGTTGGTGTTGGAGTTGGAGATAAAGATGCAAGGATGGTGAAGGTTAAGGATGAAGAAGAACTTGGTTCAATTCTTGATGACATGAGTAGTGAGGNCTTTGATTGGAATATTAATGAGTCAGAATCATTGGCAGTAGCTGCAAAGGAAGAGGTTCCATTGGTGGCAAGTAATGGTGGTGGTGGTGTAAGCGTTGGTCATGAAGTAGTGTTGGGAACTAAGAAGAAGGAGATTTTTTTGAGGCTAAACTATGAGGAGGTTATTACTGCTTGGGCCAGCCAAGGGTCTCCATGGACAACAGGAAGCCCACCTAAGTTCAACTCTCACGACTGCTGGCCTGACTTTTTGGGTTCAAGTGGCACAGAATATGNCCAAAGCTCTTATAGGGATCAAGTAAGGAGTTTAATAATGGGGCAACAAATAGGGGGTGGAGATGGAGGAAGAGAAGCAAGGGTATCAAGGTACAGAGAGAAGAGAAGGACACGTTTGTTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAATGCAGAGAAAAGACCAAGAATGAAAGTTTCAAAAAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00892	30436	34449	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000892s00021910.1	PF06203.9	CCT	358	395	1.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.151
DRR006522	Root Winter glycyrrhizin high producing strain	0.148
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	87.714
DRR006526	Leaf Summer glycyrrhizin high producing strain	87.331

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.157
SRR9715740	Leaf	75.224
SRR9715741	Leaf	51.027
SRR9715739	Root	0.000
SRR9715742	Root	0.126
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.002
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.039

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.000