Gene detail

Gene detail information of Glyur000890s00019083

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13750.1	1.00E-147	zinc induced facilitator-like 1
NR	KEH19209.1	0	zinc induced facilitator-like protein [Medicago truncatula]
COG	YP_001697064.1	8.00E-15	multidrug-efflux transporter [Lysinibacillus sphaericus C3-41]
Swissprot	tr\|Q94BZ1\|ZIFL1_ARATH	1.00E-177	Protein ZINC INDUCED FACILITATOR-LIKE 1
trEMBL	tr\|A0A072TNX0\|A0A072TNX0_MEDTR	0	Zinc induced facilitator-like protein {ECO:0000313\|EMBL:KEH19209.1}

Sequence

Transcript Sequence

>Glyur000890s00019083.1
GTAAAAGAAAAACACATGAAATTTTAACACCGTCCATTTTCCCACGTACATAAAACGTGAGACTAGGCCATGTGTTGTTCATTTTTCATTTCATTGAGCTCCTAGAGTTTCNCCAAGGAGCTTTATAAAATGATATAGGAAAGAGGGACCCGTGTGAAACAAGAAGTAGAGTTCTGTTACAGACATGGGGGATGAGGAGCACAAGATGAGAGAGNCATTGTTGAAGAAGCAGTACTATGAGGGGTGCCCTGGTTGTAAGGTGGAACAAGCCAAAGAGCTGAATAAGGGGGTATCCTATGGAAATCTTTTGGCCATATGGATGGTGGTGTTAACTGGCACGCTTCCTATATCATCTCTCTTTCCATTCCTTTATTTCATGGTAAGGGATTTTAACATTGCAGAAACTGAGGCTGATATCAGTTCTTATGCTGGTTATGTGGGATCTTCATACATGCTTGGCAGATGTTTGACATCTGTAGTGTGGGGACTGGTTGCTGATCGCATTGGTCGAAAACCTGTGATAATTATGGGGTTGATCATAGTTGTCATTTTCAATACACTATTTGGCCTTAGTACAAGTTTTTGGATGGCTGTTATCACGAGATTTCTTCTGGGGAGTTTAAATGGTGCTCTTGGACCAGTGAAGGCCTATGCCACTGAACTTGTTCGAGAAGAGCATCAAGCTCTAGGACTCTCTACTGTCAGTGCAGCTTGGGGCGTAGGTTTAATCATTGGTCCAGCATTGGGAGGCTATTTGGCTCTGCCAGTAGAGAAATATCCAAATATATTTCCAAAGGATTCTTTTTGGGATAAGTTTCCATACTTCTTGCCCTGCTTTATAATATCAGGACTTGCATTTGTAGTTGCTATTGCCTGTATCTGGATTCCGGAAACACTTCACAATCACAATGGTGGCAATGAGTCCACAGATGATGCGGAAGCTTTAGAAAATGGAAGCAATGGGGTTGACAAAGAAAAGATAGTCCAAAAGAATGAAAACCTCTTCATGAATTGGCCCTTAATGTCATCTATCTTGGTTTTCTCCTTATGGGCTGTCAGTCCTCCAAGGCTGGGAGGTTTGAACTTTACAACTGATGATGTTGGTGATGTTCTTGCAATTTCAGGTCTTGCACTTATCATCTACCAACTTACCGTATACCCAGTTGTGGAAAAAGCTTTTGGACCTATTAGCATTTCCCGCATCACAGGGANGCTTTCCATACCAATTTTGCAAAGTTACCCATTCATAGCAATGTTATCAGGCATATCTCTATACATAGTGATAAGTATTGCTTCGATCCTGAAGAATGTTCTGGCTGAACAACACCAAAGGGGGGCAGCTAATGGCATTTCTATGACAGCTATGTCTCTATTCAAAGCTATTGGCCCTGCTGCAGGTGGTGCAATATTAACTTGGTCACAAAAGCGTATGGATGCTTCTTTCCTCCCTGGCACCCATATGGTCTTCTTTGTCCTGAATTTATTTGAAGGACTTGGAATACTGATGATGTTCAAACCATTCCTCACTGAAAAGAAGAAAACATACTCAGATCATGTCATTTTCAACACACTATTTGGCCTTAGTACAAGTTTTTGGGTGGCTATTATCACGAGATTTCTTATGGGAAGCTTAAATGGCGTACTTGGACCGGTGAAGGCCTATGCCACTGAACTTGTTCGAGAAGAGCATCAAGCTCTAGCACTCTCTAGTCCAGCAGAGAAATTCCCAAATATATTTCCAAAGGATTCCTTTTGGGATAAGTTTCCATACTTCTTGCCCTGCTTTATAATATCAGGAATTGCATTTGCAGTAGTTATTGCCTGTATCTGGATTCCGGAAACACTTCACAATCACAATGGTNGCAATGAGTCCACAGATGATGCGGAAGCTTTAGAAAATGGAAGCAANGGGGTTGACAAAGAAAAGATAGTCCAAAAGAATGAAAACCTCTTCATGAATTGGCCCTTAATGTCATCTATCNTGGTTTTCTCCTTATGGGCTGTCAGTCCTCCAAGGCTGGGAGGTGTTGCGCTTATCATCTACCAACTTACCGTATACCCAGCTGTGGAAAAAGCTTTTGGACCTATTAGCATTTCCCGCATCACAGGGATGCTTTCCATACCAATTTTGCAAAGTTACCCATTCATAGCAATGTTATCAGGCATATCTCTATACATAGTGATAAGTATTGCGTCGATCCTGAAGAATGTTCTGGCTGAACAACACCAAAGGGGGGCTGCTAATGGCATTTCTATGACAGCTATGTCTCTATTCAAATCTATTGGCCCTGCTGCAGGTGGTGCAATAAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00890	65053	87431	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000890s00019083.1	PF07690.11	MFS_1	45	368	4.60E-27
Glyur000890s00019083.2	PF07690.11	MFS_1	45	289	5.60E-28
Glyur000890s00019083.3	PF07690.11	MFS_1	45	289	5.60E-28
Glyur000890s00019083.4	PF07690.11	MFS_1	45	367	2.60E-27
Glyur000890s00019083.5	PF07690.11	MFS_1	45	289	1.40E-28
Glyur000890s00019083.6	PF07690.11	MFS_1	45	289	1.40E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.089
SRR1783600	control	15.320
SRR1783602	moderate drought stress	10.214
SRR1811619	moderate drought stress	10.198

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.460
DRR006520	Root Summer glycyrrhizin high producing strain	11.631
DRR006521	Root Winter glycyrrhizin high producing strain	2.090
DRR006522	Root Winter glycyrrhizin high producing strain	1.929
DRR006523	Root Summer glycyrrhizin low producing strain	10.602
DRR006524	Root Summer glycyrrhizin low producing strain	10.434
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.606
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.472

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.625
SRR2868004	Drought Stress (root)	22.345
SRR2967015	Control (root)	28.113

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.341
SRR9715740	Leaf	7.536
SRR9715741	Leaf	11.347
SRR9715739	Root	6.996
SRR9715742	Root	13.908
SRR9715743	Root	12.200

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.441
SRR8749028	MeJA induced 9h	7.601
SRR8749029	MeJA induced 9h	4.078
SRR8749030	Uninduced	59.007
SRR8749031	Uninduced	28.982
SRR8749032	Uninduced	27.106

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.054
SRR8400027	Control - Root	18.207