Gene detail information of Glyur000890s00019080 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20160.1 | 5.00E-152 | Subtilisin-like serine endopeptidase family protein |
| NR | XP_004514295.1 | 0 | PREDICTED: subtilisin-like protease-like [Cicer arietinum] |
| COG | YP_001709364.1 | 8.00E-76 | peptidase [Clavibacter michiganensis subsp. sepedonicus] |
| Swissprot | tr|Q9LNU1|CRSP_ARATH | 0 | CO(2)-response secreted protease {ECO:0000303|PubMed:25043023} (Precursor) |
| trEMBL | tr|A0A072U098|A0A072U098_MEDTR | 0 | Subtilisin-like serine protease {ECO:0000313|EMBL:KEH19205.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00890 | 49465 | 59474 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000890s00019080.1 | PF05922.11 | Inhibitor_I9 | 31 | 113 | 5.10E-14 |
| Glyur000890s00019080.1 | PF00082.17 | Peptidase_S8 | 145 | 574 | 6.30E-34 |
| Glyur000890s00019080.1 | PF02225.17 | PA | 396 | 478 | 3.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.083 |
| SRR1783600 | control | 16.194 |
| SRR1783602 | moderate drought stress | 11.136 |
| SRR1811619 | moderate drought stress | 11.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.803 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.723 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.083 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.091 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.603 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.548 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.962 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.079 |
| SRR2868004 | Drought Stress (root) | 15.330 |
| SRR2967015 | Control (root) | 18.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.406 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.265 |
| SRR9715739 | Root | 2.144 |
| SRR9715742 | Root | 9.154 |
| SRR9715743 | Root | 7.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.033 |
| SRR8749032 | Uninduced | 0.034 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.715 |
| SRR8400027 | Control - Root | 14.173 |