Gene detail information of Glyur000890s00019072 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54380.3 | 7.00E-108 | SAC3/GANP/Nin1/mts3/eIF-3 p25 family |
| NR | XP_004514308.1 | 0 | PREDICTED: 80 kDa MCM3-associated protein-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7LJ75|G7LJ75_MEDTR | 0 | SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein {ECO:0000313|EMBL:AET02561.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00890 | 17518 | 24171 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000890s00019072.1 | PF03399.11 | SAC3_GANP | 170 | 374 | 3.30E-30 |
| Glyur000890s00019072.2 | PF03399.11 | SAC3_GANP | 170 | 383 | 9.60E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.467 |
| SRR1783600 | control | 12.391 |
| SRR1783602 | moderate drought stress | 13.825 |
| SRR1811619 | moderate drought stress | 13.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.942 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.468 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.458 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.592 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.684 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.523 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.935 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.656 |
| SRR2868004 | Drought Stress (root) | 17.964 |
| SRR2967015 | Control (root) | 21.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.016 |
| SRR9715740 | Leaf | 12.033 |
| SRR9715741 | Leaf | 11.837 |
| SRR9715739 | Root | 7.834 |
| SRR9715742 | Root | 13.763 |
| SRR9715743 | Root | 12.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.858 |
| SRR8749028 | MeJA induced 9h | 11.747 |
| SRR8749029 | MeJA induced 9h | 6.395 |
| SRR8749030 | Uninduced | 7.785 |
| SRR8749031 | Uninduced | 6.805 |
| SRR8749032 | Uninduced | 7.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.771 |
| SRR8400027 | Control - Root | 26.663 |