Gene detail

Gene detail information of Glyur000887s00036471

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27180.1	1.00E-63	disease resistance protein (TIR-NBS-LRR class), putative
NR	AHG29002.1	1.90E-136	NBS-LRR protein [Cicer arietinum]
Swissprot	tr\|O82500\|Y4117_ARATH	6.00E-52	Putative disease resistance protein At4g11170
trEMBL	tr\|W0LWS3\|W0LWS3_CICAR	7.00E-137	NBS-LRR protein {ECO:0000313\|EMBL:AHG29002.1}

Sequence

Transcript Sequence

>Glyur000887s00036471.1
ATGACTGACTTCACTTCTGCTTCCACATCTATTGATCGCAAACCAGAATGGATCTGCGATGTGTTTTTGAGTTTCTCTCCCAGAGACACCAGTAGAACTTATGTATCTCATCTCTATNCTGCCCTCACTCAGGCTGGAGTTCTTGTTTTCAAGAACGATGTCACGCTTCAATGTGGAGATGAGATAGTGCCCTCACTCACACCTGCAATCCAAGGGTCTAGAATTTCTATCATCGTTTTCTCGAGAACTTATGCCACGTCAACATGGCCTCTGGAAGAGTTAGAGAAAATAATGGAGTGTCACAGAACCATAGGCCAGCTAGACGTTCCCTCTCATGTACGTAATCAGACAGGTTTGTTTGGTGATGATTTTAAAGGGCTAGAACGTTNTGTGGAGAAAGAGCAGTTGATGAGCTGGAAAGCAGCACTCAAAGAAGCCTGCAACCTTGCAGGACATGACCATGACCTGAGTAATTACAGTGTACAAAGTGTAGATATCGAGGATATAGTTTGGGAAGTAACTAGTATTCTNGAGAAGACATACGGCTTGTTCGTTGCTTACAATCCAGTGGGATTAGAATCTCGGCTGCAAGATGCGATTAAACTATTGAAGAACAAACAACCGGAACACGACCTTGCAAAGATTTACGATGTGTTCTTGAGTTTTAAAGAGGTTGACATTGGTAATGAATTTGTTTCACATCTCTATACCTCTCTTCAAAATGCNGGGATTCATGCTTTTAGAGACAATGGTGAACTTGCAAAACGAGAAGATATTGCAGTCTCATTGTTTCAAGCAATTGGACAGTCNAGAATTTCTATCATTGTTTTGTCTAGAAACTATGTTGATTCAAGATGGCATATGCTAGAGCTGCAGAATATCATGGAGAGTCAGAGGACCGGCGGTCTAATGGTTATACCAGTTTTTTATGATTACGCAGTCAGACAGGTGAGTTTGGAAATGGTTTTAAATATCTTTTATCAAAAATACAAGTGGATGAATACACAGAGGAATTGGAAAACAACACTACTTGAAGTTGGTGGCATACCAGGAGTTGACGTCATAAATTCCAGGAATGAAAGTGAGGTTATCAAGAATGTAGTTGACCGTGTTATTAATTTGCTAGTCAACACAGACTTATTTGTTGTTGACTATCCAGTCGGGGTAGAATCTCGTGTACAACATGTTATTCAACTATTGAACAGCCAACAACCAAAGGATGATACTTTGATTATAGGGATGTGGGGGATTGGAGGGGTTGGTAAAACAACCATTGCTAAAGCCGTGTATAATAAAATTCGTTGTGATTTTGAGGCAACATGCTTCCTCCTAAATGTTAGAAAAGTTTGGAAACAAGATGATGACAAAGTTTTTTTACAGCGGCGACTTATTTCTTTTGTTTACAAAANAATGATAAAAAATATAAATACAATTGAATGGGGAAAAATCATACTAGAAGAAAGACTTCGTCAGAAGAAGATATTTCTTGTGCTCGATGATGTCAATAATTTGGAGCAATTGAATGCTTTGTGCGGAAGTCGTGACTGGTTTGGTCAAGGAAGCATAATACTCATCACAACAAGAAATATGCAAATACTTAGTCAGCTTAAAGTTGACNATGTATATAAGATGAAAGAAATGGATGACAATGAATCTCTTAAACTCTTATGTTGTCATGCGTTTGCACAACCATATCCTGGCGAAGATAGTGGCAACAGGANTGGAATGCATAATTTGGTGCAAGGCATGGGAAAAGAAATCATAAGGCAAAAATCGATGGGTATGGTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00887	65193	72780	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000887s00036471.1	PF01582.15	TIR	21	144	2.40E-17
Glyur000887s00036471.1	PF01582.15	TIR	218	340	1.90E-23
Glyur000887s00036471.1	PF00931.17	NB-ARC	390	564	1.90E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.143
SRR1783600	control	0.158
SRR1783602	moderate drought stress	0.065
SRR1811619	moderate drought stress	0.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.798
DRR006520	Root Summer glycyrrhizin high producing strain	0.833
DRR006521	Root Winter glycyrrhizin high producing strain	0.163
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.227
DRR006524	Root Summer glycyrrhizin low producing strain	0.485
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.886
SRR2868004	Drought Stress (root)	10.868
SRR2967015	Control (root)	11.105

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.004
SRR9715739	Root	0.043
SRR9715742	Root	0.261
SRR9715743	Root	0.178

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.023
SRR8749028	MeJA induced 9h	0.724
SRR8749029	MeJA induced 9h	0.059
SRR8749030	Uninduced	0.125
SRR8749031	Uninduced	0.538
SRR8749032	Uninduced	0.093

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.200
SRR8400027	Control - Root	0.737