Gene detail

Gene detail information of Glyur000886s00024473

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30070.1	2.00E-132	potassium transporter 1
NR	XP_004504614.1	0	PREDICTED: probable potassium transporter 17-like [Cicer arietinum]
COG	YP_005442390.1	2.00E-106	potassium transport protein Kup [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprot	tr\|Q67UC7\|HAK17_ORYSJ	0	Probable potassium transporter 17
trEMBL	tr\|Q5J884\|Q5J884_LOTJA	0	Potassium transporter {ECO:0000256\|RuleBase:RU321113}

Sequence

Transcript Sequence

>Glyur000886s00024473.1
CGCCCGTGGCTCTCGCTATCTGTTTGTACGTGTATTTATGAATCAGTTTTGTAAAGAGGCAATGTTTTTATGTGTGAGAAGTTAAGAGTTTGACTGGGGCTGGGGCTCGAAAAAGGAGTTTGAGTGGGACTTGGTGGTACTGTTTTGTTTTGTTTGTGGACGTGAAAATGTCAATGGAAGGCCATCTCCGCCACCCTTCATCGGACGACGTCGTCCTCAACGTCCCCGACCGCCATGCATTCATTCCTCTCCCTCAACAACAGGGGAAGGAGAAAAGGGACACTCTGGTCCTTGCATACAGGACTCTGGGAGTGGTATTTGGAGGCCTGGTGACGTCACCCCTCTACGTGTACCCTTCAATGCCGCTCAAGTCCCCAACCGAGGACGACTATTTGGGCATCTACAGCATCATGTTCTGGACTCTCACTCTCATCGGCGTCGTCAAGTACGCCAACATTGCCATCAAAGCCGATGACCACGGTGAAGGTGGGACGTTTGCCCTCTATTCATTGCTCTGCAGGCATTTCAATATTGGAATCCTTCCTTCTAAGCAGCAAGCGTTAAACTCTGCCACAACAACTAGGGGCACCGGCACGCATACCTGGCTTGCTAAACTGTTCGAAACCAGCGTGGTTGCTCGGAGGCTCTTGCTTTTCGTTGCCATGTTGGGTACTTGCATGCTTATTGGTGATGGCATACTTACCCCTGCAATTTCAGTGTTGTCGGCAATGGATGGACTAAGAGCACCTTTTCCTTCAGTTAGCAAATCACTAGTGGAAACACTTTCTGCAGTTGTCTTGATCCTTCTGTTCTTGTTGCAAAAATTTGGTACATCCCGCGTCAGTTTCCTCTTTTCCCCAATAATGGGAGCATGGACCCTGTGTACCCCAATTGTAGGAATTTACAGCATCATACACCACTATCCAAGCATATTCAAGGCTTTATCTCCGCACTACATTTTCCGTTTCTTTTGGAGAAATGGAAAATCTGGGTGGCTTTTACTTGGTGGTACTGTCCTTTGCATTACTGGTTCTGAGGCAATGTTTGCTGATCTCGGTCATTTCAATCCACGGTCCATTCAGATAGCTTTTCTATTCACAATCTACCCATCTTTAGTTCTGACTTATGCTGGACAGACAGCATATCTGATCAAGCATCCTAATGATCATGATGATGGCTTTTACAAATTTATACCAACTCCAGTCTACTGGCCAATCTTTGTTATTGCAACATTGGCTGCAATTGTTGCTAGCCAGTCATTAATATCGGCCACCTTTTCTGTAATCAAGCAATCNGTAGTGCTGGATTATTTTCCTCGAGTAAAGATTGTGCACACATCGAATAATAAAGAAGGAGAGGTTTACTCCCCTGAAGTGAACTACATCCTAATGGTCCTTTGCGTTGCTGTCATACTTATTTTTGGAGATGGAAAAGATATTGGAAATGCTTTTGGTGTTGTTGTGAGCCTAGTAATGCTTATCACCACTATATTACTTACATTGGTCATGATCATGATATGGAGAACTCCTGTGGTGGTGGTTTCCCTGTACTTCTCTGTGTTTTTTGTGATGGAAGGGNTTTATGTCAGTGCAGTTTTCACTAAATTTGCTGAAGGTGGATGGATTCCTTTTGCCATATCATTTATCCTTGCTTTCATCATGTTCGGTTGGTTTTATGGTAGACAAAGAAAGATCGAATATGAGTTAACCCACAAGATAACCTTTGAGAGACTTGCAGAGCTTTTGGCTGACTGCAGTGTTCAAAGGGTTCCTGGGCTATGCTTCTTTTATACTAACATTCAAGATGGGCTGACTCCTATTCTTGGNCACTACATAAAGAACATGAAATCCCTTCATAAGGTCACAATATTTACNACTCTTCGGTATTTGTTAGTCCCCAAGGTTGCTCCACATGAGAGGATTGTCATCATGAAATCAAATCTCCAAGGGGTATATTGTTGTGTGATTCAGTATGGTTATGCAGATGCTCTAAATATAGGAGATGATTTTGTAGCTCAAGTGATTAACAGTTTGACAATACATATACAGAACAGCTCTGACAATCTTTCATCTGATTCTCAAGAGATTCACAGTTTAGACGAAGCGCGGTTTGCCGGGGTTGTTCATGTTCGGGGGAAGACGAGATTTTACATTGGTTTGAACTGTGGCTGGTTTGATAAAATCATGCTTAGTTTTTATGAAGTCATGCACGGTAACTGTAGATCTGGTCTGCCTGCTCTAGGGGCTTCATTACAGCAAAGGATTGAAGTTGGAATGCTTTACGAGGCTTGAAGGGTTTACCATATTCAAGCATATTTATTTCACATGATTCAGCAATTTCACTGGCTCATGCAGTCTCATATACTGAATACTTCTTGCATTCAAATATTTCTTTGTTTGATCGAGGTTCAATGAACTCTGGGCTATGCTCACAATCTCACATATTGAATAATCCTTGCATGAATACAGCGCCTATAGGCACAACTAACCTAGATTTAAAGATACAATAAAACAATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00886	97663	102237	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0071805 potassium ion transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0015079 potassium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000886s00024473.1	PF02705.11	K_trans	44	606	5.70E-188

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.089
SRR1783600	control	8.202
SRR1783602	moderate drought stress	5.074
SRR1811619	moderate drought stress	5.058

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.135
DRR006520	Root Summer glycyrrhizin high producing strain	5.130
DRR006521	Root Winter glycyrrhizin high producing strain	2.124
DRR006522	Root Winter glycyrrhizin high producing strain	2.028
DRR006523	Root Summer glycyrrhizin low producing strain	6.358
DRR006524	Root Summer glycyrrhizin low producing strain	6.466
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.084
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.033
SRR2868004	Drought Stress (root)	17.136
SRR2967015	Control (root)	16.081

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.018
SRR9715740	Leaf	3.960
SRR9715741	Leaf	3.409
SRR9715739	Root	3.891
SRR9715742	Root	7.152
SRR9715743	Root	7.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.539
SRR8749028	MeJA induced 9h	13.754
SRR8749029	MeJA induced 9h	14.390
SRR8749030	Uninduced	7.906
SRR8749031	Uninduced	8.274
SRR8749032	Uninduced	7.068

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.855
SRR8400027	Control - Root	10.094