Gene detail

Gene detail information of Glyur000886s00024471

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01980.1	5.00E-151	sodium proton exchanger, putative (NHX7) (SOS1)
NR	XP_004504612.1	0	PREDICTED: sodium/hydrogen exchanger 7-like isoform X2 [Cicer arietinum]
COG	YP_001996721.1	1.00E-94	cyclic nucleotide-binding protein [Chloroherpeton thalassium ATCC 35110]
Swissprot	tr\|Q9LKW9\|NHX7_ARATH	0	Sodium/hydrogen exchanger 7
trEMBL	tr\|H9CDQ2\|H9CDQ2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G09730.1}

Sequence

Transcript Sequence

>Glyur000886s00024471.1
ATGGCGGAATCACTGCTTCCCTACAGATTCATCATGGAGGATCAACAACAACAGCCCCTTTCCTTTTCAATTTCCGTTTCTGCTTCTTCTGCAGCTCCTTCTGCTGCTTCAGAGGAACAATACAATCCATCAGATACAGTCATCTTCTTTGGTATCAGCTTGGCTCTTGGGATTGCTTGTAGGCACCTCTTGCGTGGCACCAGAGTCCCTTACACTGTTGCCTTGCTCATCCTTGGCATTGCCCTTGGATCCTTAGAATATGGTACTCATCATCGGCTGGGAAGGATTGGGGATGGAATTCGGTCAGAGATTGATCCAGAACTTCTGTTAGCTGTTTTTCTTCCTGCTCTCCTTTTTGAGAGCTCATTCTCAATGGAAATTCACCAAATTAAGAGGTGTATTGCACAAATGNTCTTACTAGCTGGTCCAGGTGTTGCGCTTTCGACAGTTTGTCTTGGATCTGTTTTGAAGCTTACTTTTCCATATAACTGGAGTTGGAAAACNTCACTGTTGCTTGGGGGACTTCTGAGTGCAACTGATCCTGTTGCTGTTGTGGCCTTGTTGAAAGATCTTGGTGCCAGCAAGAAACTAAGCACAATAATTGAAGGGGAATCCTTGATGAATGATGGGACGGCTATTGTGGTTTATACCCTTTTCTATCGGATGGTTCTTGGAGAAACCTTCAACTGGGCTGCCGTGATCAAATTTCTAGCACAAGTTTCACTTGGAGCTGTAGGGATTGGTCTTGCTTTTGGGATAGCATCTGTTTTGTGGCTTGGGTTTATTTTTAATGATACAGTGATTGAGATTGCCCTAACACTTGGTGTTAGCTACATTGCCTATTTCACTGCTCAAGAGGGTGCAGATGTTTCTGGTGTTTTGACGGTGATGTCATTGGGAATGTTCTATTCTGCATTTGCAAGGACAGCTTTTAAGGGTGAAAGTCAACAAAGCTTACATCACTTTTGGGAAATGATTGCTTATATTGCCAATACATTAATTTTCATTTTGAGTGGAGTTGTTATAGCTGAGGGAGTACTTAGTGATGAGAATGTTTTCCATCATGGAAAATCATGGGTCTACCTCTTGCTTCTCTATGTGTATGTTCAAGTGTCTCGATGCATTGTAGTTGGNGCATTATTTCCCTTTCTAAGATATTTTGGATATGGTTTGGACTGGAAAGAAGCTATAATTCTCATCTGGTCGGGATTGCGAGGAGCACGTTCGAGTGGCAGATCAATTGAATTGACTTCAGAGACGGGAACAATGTTTGTTTTCTTCACTGGTGGAATTGTGTTTTTAACACTTATTGTAAATGGTTCAACCACACAGTTCATTTTGCACTTCCTTGACTTGGATAAGTTATCAGCAGCTAAGGTGTCCAAGCTGCTTACTGGGAGATGCTTGATGAAGGGAGAATTAGTCAAACAACAGCTAATATCCTAATGCAATCAGTGGATGAAGCATTGGATTTGGCTTCATCGGAGCCTCTATGTGATTGGAAAGGTTTAAAAGCTAATGTTCACTTCCCAAATTACTACAAGTTCCTCCAGTCTAGTATGTTCCCACCGAAGTTAGTTACATACTTCACTGTGGAAAGGTTGGAGTCAGCATGTTATATTTGTGCTGCATTTCTTCGAGCCCACAGAATTGCTCGACAACAATTACATGACTTCATAGGTGACAGTGATATTGCTTCTGCTGTCATCAATGAAAGTGTTGTAGAAGGAGAAGAAGCGCGAAAGTTCCTAGAAGATGTTCATGTAACATACCCTCAGGTTTTACGTGCTGTAAAAACAAGGCAAACAACATACGTAGTGCTAAATCATTTAATTGAATATGTTCAAAACCTTGAGAAGGCTGGGATATTGGAAGAGAAAGAGATGGTACATCTTCATGATGCTGTCCAGACTGATTTAAAGAAATTACTTAGAAATCCTCCTTTGATTAAGCTTCCTAAAAGAAGTGATATACATCCTATGTTGGGTGCTTTGCCATCTTCAGTTCGTGAACTACTCATATGCAGTACAAAGGAAACGATGAAATTGCGTGGTTTGACAGTTTACAAGGAAGGTGCCAAATCAAATGGTATTTGGTTAATTTCTAATGGAGTGGTGAAGTGGGAAAGCAAGACGATAAGAAACAAGCACCCTTTTTATCCAACTTTTACGCATGGGAGCACATTGGGTCTTTATGAAGTGCTGACCGGAAGACCATATATCTGTGATGTCATCACAGATTCCATCGTATTCTGCCTTTTTGTTGAAGCTGATAAGATAATTTCATGTCTCAAATCTGACCCTTCAATGGAAGACTTCCTGTGGCAGGAAAGTGCTATTTTCCTTTCCAAAGTATTGCTTCCCCAGATATTTGAGAAACTAACTATGCAAGATTTAAGAGCTCTTATTGCTGAAAGATCAGAAATGACCATATACATAAGAGGGGAAACNATAGAAATCCCTCAGCATTCAGTTGCCATTTTACTAGAAGGATATGTCAAAACTCAAGGTCGTCAAGAACTGGTAACAGCACCAGCAGTCCTGCTTCCTTCACATGGGAGTCGAAGCTTCCAAAATTTGGCAACGTCAGGTGCTAAGGAAGCTAGTTTTATTCATCAAGGATTTTGTTTAGTTGAAACTAGAGCAAGGGTCATCGTGTTTGACATTGCCGCATTTGAGCCTGATGCTGCTCTTGTTAGAATGTCAAGTTCACTGTCGTCACATGCAGTGGATCATCCCCATAAATCCTTCCGTAGAGAACATAGTGGGCTTATGAGTTGGCCTGAACATTTCTACAAGCAGAAGCACCATAAGCACAGCTCTGAACAACAAACCAATAGTTTGTCTGCAAGGGCAATGCAGCTGAGCATCTATGGGAGCATGGTGGACATCCCGGGCCGGAGTAGAAGTATGTCACGCCGGAGTAGAAGTTTGTCAACCAATCGCGCCAGACCACCACCACAAAGTCTCTCATATCCAACCATTGTGTCTCATGAAGGCCGTCCACTTGTTTCAGTCAAATCAGAAGGGGCTGCAACTGACAAGAAGGACCATCGAGTGGAGTTTGCGCGAGATGTTATAAATCTCCCTTCACAAAGCACAGAACCAAAAGAACATCATGGAGATGATTCAAGTGATGATTCTGCTGTGGAAGAAGATATTATTGTGAGGATTGATTCACCTAGCACGCTATCTTTTCGCCAGTCTTGAGGGGGAAGAGGTGAAAAACCCGTTGTGATTATTTGTGTAATAAATGTTGCTTCTAGATCAGCAACGTTGTACATAAGTAATACCACGAAAGCTCTAGAAAACTATTTGTCGTGTCTTGAAACAAAAATTAAACAATAAAGATATTTGGAAATGGTTGTTGTTACTCGGATTTTTTAAAGTTGTCCTGAAATTTTGTTATGAAAGTAGAAACACCAGAACACCTTCAACTTGTTCTCAAAGTCTGTTATTTGGTGTCTTTTTTTGTGTGTGGTGGCAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00886	77516	95155	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015299 solute:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000886s00024471.1	PF00999.16	Na_H_Exchanger	50	447	2.10E-58
Glyur000886s00024471.2	PF00999.16	Na_H_Exchanger	4	236	1.80E-22
Glyur000886s00024471.2	PF00027.24	cNMP_binding	551	634	2.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.950
SRR1783600	control	32.271
SRR1783602	moderate drought stress	31.686
SRR1811619	moderate drought stress	31.285

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.655
DRR006520	Root Summer glycyrrhizin high producing strain	29.311
DRR006521	Root Winter glycyrrhizin high producing strain	32.937
DRR006522	Root Winter glycyrrhizin high producing strain	31.933
DRR006523	Root Summer glycyrrhizin low producing strain	28.372
DRR006524	Root Summer glycyrrhizin low producing strain	28.225
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.385

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	133.072
SRR2868004	Drought Stress (root)	155.787
SRR2967015	Control (root)	143.478

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.916
SRR9715740	Leaf	23.598
SRR9715741	Leaf	27.801
SRR9715739	Root	7.031
SRR9715742	Root	27.775
SRR9715743	Root	24.025

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.563
SRR8749028	MeJA induced 9h	74.853
SRR8749029	MeJA induced 9h	67.004
SRR8749030	Uninduced	77.727
SRR8749031	Uninduced	69.387
SRR8749032	Uninduced	61.928

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.659
SRR8400027	Control - Root	49.785