Gene detail information of Glyur000886s00024463.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G14685.3 | 2.00E-80 | basic pentacysteine 2 |
| NR | XP_007158817.1 | 0 | hypothetical protein PHAVU_002G184500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SKD0|BPC1_ARATH | 9.00E-106 | Protein BASIC PENTACYSTEINE1 |
| trEMBL | tr|V7CPG3|V7CPG3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW30811.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00886 | 30015 | 30857 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | BBR-BPC |
| EAR motif-containing Proteins | BBR-BPC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000886s00024463.1 | PF06217.7 | GAGA_bind | 1 | 280 | 5.80E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.356 |
| SRR1783600 | control | 38.290 |
| SRR1783602 | moderate drought stress | 23.132 |
| SRR1811619 | moderate drought stress | 23.622 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.067 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.874 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 59.097 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 61.102 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.618 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.850 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.364 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 46.525 |
| SRR2868004 | Drought Stress (root) | 45.070 |
| SRR2967015 | Control (root) | 51.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.637 |
| SRR9715740 | Leaf | 11.011 |
| SRR9715741 | Leaf | 13.805 |
| SRR9715739 | Root | 33.412 |
| SRR9715742 | Root | 22.012 |
| SRR9715743 | Root | 22.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 47.639 |
| SRR8749028 | MeJA induced 9h | 51.362 |
| SRR8749029 | MeJA induced 9h | 51.522 |
| SRR8749030 | Uninduced | 20.578 |
| SRR8749031 | Uninduced | 27.255 |
| SRR8749032 | Uninduced | 41.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.509 |
| SRR8400027 | Control - Root | 31.124 |