Gene detail

Gene detail information of Glyur000886s00024460

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68100.1	7.00E-80	ZIP metal ion transporter family
NR	XP_003524844.1	2.69E-171	PREDICTED: IAA-alanine resistance protein 1-like isoform X1 [Glycine max]
COG	YP_001997294.1	3.00E-24	zinc/iron permease [Chloroherpeton thalassium ATCC 35110]
Swissprot	tr\|Q9M647\|IAR1_ARATH	1.00E-116	IAA-alanine resistance protein 1 (Precursor)
trEMBL	tr\|I1K3B7\|I1K3B7_SOYBN	1.00E-171	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G26820.1}

Sequence

Transcript Sequence

>Glyur000886s00024460.1
GGTGATGTTGCTGCAGAGAGCAGCAGTAGCCAGTAGCAGTGCCACTGCTGGAGCCTCGATAAAAGGGAAGAAACTGAAATGTACAATTGAATTTAGCCAGGGAAACAATAATGAAAATGAAAAAACCGTGTAATTAAGAAAATGTTATGTAGTAGTTAGTTAGTACAAATGGATGTAGTAACCTTCGGAATCATAATCGCCGTTATCATCCTCTTCTTAGTAATTGTTTGCTACATCACCATCGAAGGCACTTGCAAGTCACGCTCTTAAGGTAGTAGTGCAGTCAGTGTCCTTTGAATTCTTCTATTACCCTTTTCAATTCGATGGCATTGAGTAGAAAGAGAGTTGAATCGGCTTTGCTCCTTGTGGGTTTGGTTCTGTTTGGGTCCTGTTTGGATCTGGGAACGGGGCATCAGCATCACGCTCACTCCCATTCTGGTTCCTGTGCATCCGATTCCGAGGCCCATCATCGTCACTGTGGAGATGCCCATGACCATGACCATGACCATGACCATCACCATGCCCATCATCACGACGACAATGAGAAAATGGTTGATGCGCGGAAGCTTCCGGAGGAGTTAGCGGAGGAGGAGGACATGAAACTATACGGGTTTGGTTTACCCCATGACCATGGCCATGACCATCATGATCATGGCCACCANCACTATATTGGGGCCACTGAACTATCGGGTTTAGGCCTTTGGTTGAATGCGTTGGGCTGTTCATTTCTGGTGAGCATGGCTTCCCTTATTTGCCTGATTCTCCTGCCTGTAATTTTTGCACAAGGGAAACTATCAAAGGCTGTTGTTGATTCATTGGCTTTATTTGGGGTCAGGTTTCTTCTAGCTCCTTTCTTTGGTTTCACTATCTCAAGTTCACTATTGATTGCTTTTCTTTCACTATGTTTATCATCATCAAAACTACTTGGTTATCCCATCTGAGCTATGTTGGGGGATGCTTTTCTTCACCAACTACCGCATGCTTTTGACCATGACCATGCTGCTAGTTCTGGACATGGACATTCACATTCTTTAGCTGATCTTTCTACAGGAATATCTATCCTAGCTGGAATTGTACTCTTTCTTCTTGTGGAGAAGCTAGTGAGGTATGTTGAAGAAAACTCAGGAGGAGCTAATTCATGGACGCATGGACACCACCACCACAACCACAACAGCAAGAAAAAATTGAAAGATGATAACAATTCCGATGTCAACTCGCAGTCAGAGTCTTTCAATGCAAAAGAAGAGAGATTGCTAGATGAGGGAAAAGAATACAATCAGGCATCACCAGACTCTTTTAAGGGAGATAATCCAGCTCAATCTGAATCCTCGCTTAGAAAGAGAGTTGGAAGCAATGCAACCAAAGGTGATAATCTCAGAGATAATGCTGTAGATAGCTCCACAGATAACATCAATTCATCAAATGTTAAGGAGCCAGTTAGAACACCAACAAGTCTTGTTTTTGGTTATCTCAATCTTTTCTCTGATGGAGTTCATAATTTCACCGATGGGATGGCATTAGGAAGTGCGTTCATGCTTTATGGATCTGTTGGTGGCTGGTCTAGAACTCTGTTTTTGTTGGCACATGAGCTTCCTCAAGAGATTGGTGATTTTGGTATTCTGATAAGATCTGGTTTCAGCATACCAAAAGCTTTGTTCTTCAACTTTTTATCAGCACTTGTGGCACTTGTAGGCACTGCATTGGCTCTGCTCTGGGGGAAAGATCCTGGACAGTCATCTCTGATTGAGGGATTTACAGCAGGTGGATTTATATACATAGCAATTGCAGGAGTGCTTGCAGAAATGAATAACAGTGGGAAAACAACATTGAGAGGCACAGCTCTCCAAATAATCTCACTGACAATGGGCATGGCTGTGGCCCTTGGTATTTCCCTTGTAGAATGATTGAAATGTGCTCTCTTATGACAGGATTTGCATATCTTGATTCTTGATGTGCCAATTATATCACAAAAATGTATACAACCGTTCTTAAAATTCGTCCATTATATCTGCTTTATGCTAAATGGTGAACCCAGAAAAGCTTGTAGGGAAGGGGAACTGGGAGAAAATGATAGATCAAACAGAATGGCCAGGCTCAAACTTTCAATGATTCCTTACCCCATAACCGAGTAAACTTTGTATAGTAGATATTTCTTTCAGTCTTTCATGCTAGCCTAGCATAAACCATTTGTATTTGTCAGATTATGTTGTAACATTTTTGCCCCTTTTGAGCTGTATACCAGTCAAAATGCTTTCCTCTTCCTTATGCACGTGAAATGAAAACACTGATTGTGTCTGATTGACGTTGTACGTTTTATTCTCCTTCCTCGTCTTTGTCCTTTTCTTTTTGTTTTATGGACAAATGACGTTGATCTATATGAATTTCAATCCACAGTCCACACATTTTGACGGGATGCGGGTTTTGATTTTGAAATTTCATGTAAAGCACTTCAACAAGTAATTATTGCACNGTGAATTGTGTAATCTTCACATTTGAAAACACTTGAAAGTATAATATTAATGTCCGATTTAATTAATACAAAACATGAGAGATACATTTTCTCGACAACGACATATGATGAAAACTTGGGGTCCTTCATGCACCAATGCTTTCGGTCTTGCTCTGTTGAAGTTCCCCAATTTATCAGTTATGATCAAAATGCATCCCTTGTTGCATGGAATGTGTGGTTGTTTGTTAAGACTCAAACTTGTCCATCTGCTGAAGCACTTGAAAGATAGTGATATTCTGGGATGGTAGAGGTGGCATTCTCATCAATGGAGTCATCACAATGTCTCCTCCATGTGTGAGGGTGTGATGCCGCTTTCGTACTCCTCGAGCAGGGGCTTCTGTTTCCATGGCAGCTGTTTTTTCTCCCTCCCCCATGGCCCCAGATGTCTCCACTCTCTTCCTTAGGCTTTCTGCAAACCTCTTTTCATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00886	13167	20364	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0030001 metal ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0046873 metal ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000886s00024460.1	PF02535.17	Zip	1	315	4.50E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.904
SRR1783600	control	22.032
SRR1783602	moderate drought stress	17.297
SRR1811619	moderate drought stress	17.347

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.994
DRR006520	Root Summer glycyrrhizin high producing strain	27.788
DRR006521	Root Winter glycyrrhizin high producing strain	8.536
DRR006522	Root Winter glycyrrhizin high producing strain	8.106
DRR006523	Root Summer glycyrrhizin low producing strain	21.835
DRR006524	Root Summer glycyrrhizin low producing strain	22.494
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.372
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.414

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.135
SRR2868004	Drought Stress (root)	21.044
SRR2967015	Control (root)	19.760

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.437
SRR9715740	Leaf	8.412
SRR9715741	Leaf	8.752
SRR9715739	Root	2.782
SRR9715742	Root	11.829
SRR9715743	Root	9.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.414
SRR8749028	MeJA induced 9h	13.176
SRR8749029	MeJA induced 9h	12.892
SRR8749030	Uninduced	5.188
SRR8749031	Uninduced	2.369
SRR8749032	Uninduced	3.254

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.557
SRR8400027	Control - Root	33.044