Gene detail

Gene detail information of Glyur000886s00024459

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25300.1	2.00E-41	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_007022033.1	2.14E-106	Senescence-related gene 1 [Theobroma cacao]
COG	YP_003209425.1	2.00E-11	hypothetical protein CTU_10620 [Cronobacter turicensis z3032]
Swissprot	tr\|D4N501\|DIOX2_PAPSO	2.00E-56	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase
trEMBL	tr\|A0A061F9I1\|A0A061F9I1_THECC	8.00E-107	Senescence-related gene 1 {ECO:0000313\|EMBL:EOY13558.1}

Sequence

Transcript Sequence

>Glyur000886s00024459.1
ATGGATGCAACATCTCTTACTGTTCCCTCTGTCCAGGAAATAGCAAAAGGGTCATTGACCACAGTTCCAGAGCGTTATGTCCGTCCACCCCATCAGCGTCCAACAACATTATTTGCCACTACTCCTTTACCAGACCAAGTTCCTGTCATTGACCTTAGCAAATTGCTGTCCCAAGATGATCTCAAGGGACCTGCTGAGCTGGAAAANCTACACTCTGCCTGCAAAGATTGGGGCTTCTTTCAGCTGATTAATCATGGAGTGAGCATTTCATTGCTAGAAAATGTGAAGAAGGGTGCTCAAGAATTCTTCAATCTTCCAATTGAAGAGAAGAAGAAGAAGTTTGGGCAGAAGGAAGGAGATGTGGAGGGATATGGTCAGGCCTTTGTGGTCTCTGAGGAGCAGAAATTGGAGTGGGCAGATTTGTTTTTCTTACTCACTTTGCCCCCCCACATGAGGAAACCCCATTTATTCCCCAACCTCCCCTTGCCATTCAGAGATGATTTAGAAGCCTACACTGCAGAACTGAAAAACCTTGCGATCCAGATGATAACAAATGGAATTTATAGAAGCATCGAACATCGAGCAACAGTTAACTTGGAGAAGGAAAGACTTTCTATAGCTACATTTTACAACCCTGGTGTGGAAATAACTGTACGTCCAGCACCGAGCCTTGTTACTCCNAAAACACCAGCAGTTACTATGGACGTATCCTCTATTCTGGTGCCCTCTGTACAAGAGCTAGCAAAGGAGGCATTGACCAGAGTTCCAGAGCGATATGTTCTTAATCCAGATCAAGACCCTCTACCTCTATCTAATAACTCTGCCCCTTTACCAGATCAAGTTCCTGTCATTGACCTTAGCAAATTGCTGTCCCAAGATGATCTCAAGGGACCTGCTGAACTGGAAAAGCTACACTCTGCCTGCAAAGATTGGGGCTTCTTTCAGCTGGTTAATCATGGAATAAGTACTTCATTGGTGGAGAATATGAAGACAGGTGTCAAAACGTTATTCGAACTTTCAATGGATGAAAAGAAGCAGCNATGGCAGAGAGAAGGGGACTTGGAGGGATTTGGTCAGGCCTTTATTGTATCTGAGGAGCAGAAACTAGAATGGGCAGATGCTTTTTTCATGATAACTNTACCCCCTCACTTAAGGAAACCCCATCTATTCAACCAAATCCCTCAATCATTCAGGTTCTCTTTTTCTCTTTTCTGTCATATTATGACAAACGGGATTTACCGGAGCATTGAACATCGAGCAACAGTTAACTCNGAGAAAGAGAGGATTTCCCTAGCTACTTTTTACGGCCCTAACATGCAAGCAATTTTAGCTCCAGCACCAAGTCTTGTTACTCCAGAAAGACCAGAACAGTTTAGAAGGATTAGTGTGGCAGATTACTTTAAAGGGTACTTTGATCAAGAGCTCAGTGGAAAATCATATCTTGATGAGGTGAAGATCCCAAAGGGAGAATGATAAAAGCTCTTAATTACTAGAACTTGGGATGGAATTAACACTACAATTCATTGAGCGTTTATGGTAATAAAAGCCTCTGCTTGTCATTAAAGTAGTATTGTATGCATTAATTGATGATCAGCAAGTGTGCATGTCACAATAGCACAACTGCATTTGGATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00886	1331	10531	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000886s00024459.1	PF14226.1	DIOX_N	47	158	1.10E-26
Glyur000886s00024459.1	PF03171.15	2OG-FeII_Oxy	180	212	8.40E-05
Glyur000886s00024459.1	PF14226.1	DIOX_N	281	393	2.80E-25
Glyur000886s00024459.1	PF03171.15	2OG-FeII_Oxy	393	437	3.20E-06
Glyur000886s00024459.2	PF14226.1	DIOX_N	47	159	2.10E-25
Glyur000886s00024459.2	PF03171.15	2OG-FeII_Oxy	159	203	1.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	123.567
SRR1783600	control	124.039
SRR1783602	moderate drought stress	120.644
SRR1811619	moderate drought stress	120.145

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.418
DRR006520	Root Summer glycyrrhizin high producing strain	5.504
DRR006521	Root Winter glycyrrhizin high producing strain	2.788
DRR006522	Root Winter glycyrrhizin high producing strain	3.045
DRR006523	Root Summer glycyrrhizin low producing strain	2.856
DRR006524	Root Summer glycyrrhizin low producing strain	3.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.630

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	114.538
SRR2868004	Drought Stress (root)	294.196
SRR2967015	Control (root)	203.322

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.703
SRR9715740	Leaf	10.205
SRR9715741	Leaf	14.433
SRR9715739	Root	156.518
SRR9715742	Root	106.557
SRR9715743	Root	112.872

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.851
SRR8749028	MeJA induced 9h	38.288
SRR8749029	MeJA induced 9h	24.481
SRR8749030	Uninduced	54.349
SRR8749031	Uninduced	78.617
SRR8749032	Uninduced	40.164

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	368.524
SRR8400027	Control - Root	251.503