Gene detail information of Glyur000882s00021663 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G25380.1 | 3.00E-120 | cyclin a2;1 |
| NR | XP_004501282.1 | 0 | PREDICTED: cyclin-A2-1-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q39071|CCA21_ARATH | 4.00E-145 | Cyclin-A2-1 |
| trEMBL | tr|G7JBQ1|G7JBQ1_MEDTR | 0 | Carboxy-terminal domain cyclin {ECO:0000313|EMBL:AES73717.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00882 | 95159 | 99266 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000882s00021663.1 | PF00134.18 | Cyclin_N | 224 | 350 | 3.50E-45 |
| Glyur000882s00021663.1 | PF02984.14 | Cyclin_C | 353 | 491 | 1.20E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.325 |
| SRR1783600 | control | 1.174 |
| SRR1783602 | moderate drought stress | 0.877 |
| SRR1811619 | moderate drought stress | 0.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.236 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.244 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.586 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.583 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.437 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.685 |
| SRR2868004 | Drought Stress (root) | 3.913 |
| SRR2967015 | Control (root) | 4.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.557 |
| SRR9715740 | Leaf | 0.084 |
| SRR9715741 | Leaf | 0.662 |
| SRR9715739 | Root | 0.248 |
| SRR9715742 | Root | 0.358 |
| SRR9715743 | Root | 0.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.322 |
| SRR8749028 | MeJA induced 9h | 15.937 |
| SRR8749029 | MeJA induced 9h | 8.645 |
| SRR8749030 | Uninduced | 4.063 |
| SRR8749031 | Uninduced | 0.571 |
| SRR8749032 | Uninduced | 1.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.410 |
| SRR8400027 | Control - Root | 5.072 |