Gene detail

Gene detail information of Glyur000882s00021659

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15550.1	5.00E-82	gibberellin 3-oxidase 1
NR	XP_003527798.1	0	PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Glycine max]
COG	YP_007565700.1	2.00E-24	putative oxidoreductase [Ilumatobacter coccineus YM16-304]
Swissprot	tr\|O24648\|G3OX_PEA	8.00E-115	Gibberellin 3-beta-dioxygenase 1
trEMBL	tr\|I1K8Z6\|I1K8Z6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G07630.1}

Sequence

Transcript Sequence

>Glyur000882s00021659.1
CTCATTTACAACTCTATCATAATTCCAACACTCATTTAACACGTTTGTCTCATTCTTGATCTATATATTCTTCTCTCTCTATAGATATATAATATCATTTAGGTGTCCACTCCAAGCTTCATTTTTCAAACCAATAACAGACACCACATGAGTCCANATAGCCACCCCATCTCTATCATTTTAATTTATAACCTACTAATCTCGATCGCTAGCTTAGTACTATTCATATATTTGTAAACATACACACACAATTCTGATCAATCAAGCAACAAATACCCTAATCTCTTAATTTCCTATTGATGCTATCTTGCACTTTCAGCTACTTTTGATGAAATGGTAAGTTCTCTCTCTGAAGCCTATAGAGAACACCCTCTCCACCTCCATCATATCATCCCCTTAGATTTCTCTTCAGTTTCTACCTTACCTGATTCCCACGCATGGTCTCCTCTATCCAATGATCATGATGATGATGATGCATTCAATGGATCATCATGTTCTAGTATACCCATGATCGACCTGATGGATCCCAATGCCATGGAGTTGATGGGGCATGCATGTGAGGAATGGGGTGCCTTCCAATTGAAGAATCATGGCATACCCTTTAGTGTTATTCAAGAGGTTGAAGGTGAGGCCAAGCGCCTCTTCGCTCTCCCCGCTCACCGGAAGCTGAAGGCGCTAAGATCTCCCGGCGGCGCCACCGGGTATGGCAGGGCAAGGATATCACCGTTCTTCCCAAAGTTGATGTGGCATGAAGGGTATACCATCATGGGTTCTCCATCTGATGATGCCAAAAAGATATGGCCTCATGACTACACACGCTTTTGTGATTTGATGGAGAATTATCAGAAGCAAATGAAGGGTCTAGCGGAGAAACTAACACAAATGATGTTGGGCTTGTTGGGCATTAATAATTGTGATGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGGGTAATTGGTAATTCATCCAGCAACAACAACCCGAACTGTGGAGCGGTTCAGTTGAATTTCTACCCAAGGTGTCCCGAACCGAACCGAGCCATGGGTTTAGCCCCTCACACGGACACCTCACTCTTCACAATCCTCCACCAAAGCCAAACCAAGGGACTCCAAATCTTCAAGGAAGGAAAAGGGTGGGTTCCAATTCACCCACCTCCAAACAACAACAACAACAACAACACTAATAGTTACGGTACTCTCCTTGTTCACACGGGTGACCTCTTGCACATTCTTTCCAACGCAAGGTTCCAATGTGCGCTTCACCGCGTCACCGTNAATAACACGCGCCACCGTTACTCCGTCGCCTACTTCTATTGCCCACCACTCGATTGTGTCGTCTCCCCTCTGGATAACATTGCACCTCGTTTTCGTGCTGTCACCGTGAAGGAGTATATTGGGATTAAGGCCAAGAATTTTGGGGATGCACTCTCTTTGATTAGTACTTGATCAAACTAGAAATTAAACACATATATGTACACATGCGTGTGTATTCCTTAATTTGTCTTGAAATGCTTTAAATTTGTTTTGTTTGCTTCTTAATTTTGTTTCTTTGCGAATTTTCCAGCCTTGGTATTGGNAGATAGATAGATAGATCGATCAAAGTTACTGTGGGTTAGGAAAATGTCGTCGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00882	72340	74699	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04124	E1.14.11.15	EC:1.14.11.15	Diterpenoid biosynthesis	map00904

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000882s00021659.1	PF14226.1	DIOX_N	57	158	2.30E-22
Glyur000882s00021659.1	PF03171.15	2OG-FeII_Oxy	223	330	7.80E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.933
SRR1783600	control	2.129
SRR1783602	moderate drought stress	2.311
SRR1811619	moderate drought stress	2.215

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.583
DRR006520	Root Summer glycyrrhizin high producing strain	2.417
DRR006521	Root Winter glycyrrhizin high producing strain	15.944
DRR006522	Root Winter glycyrrhizin high producing strain	16.182
DRR006523	Root Summer glycyrrhizin low producing strain	2.022
DRR006524	Root Summer glycyrrhizin low producing strain	2.110
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.224
SRR2868004	Drought Stress (root)	0.475
SRR2967015	Control (root)	0.217

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.165
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.448
SRR9715739	Root	0.603
SRR9715742	Root	0.327
SRR9715743	Root	0.650

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.022
SRR8749028	MeJA induced 9h	0.390
SRR8749029	MeJA induced 9h	0.037
SRR8749030	Uninduced	0.037
SRR8749031	Uninduced	0.093
SRR8749032	Uninduced	0.077

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.332
SRR8400027	Control - Root	0.131