Gene detail

Gene detail information of Glyur000882s00021652

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15520.1	0	pleiotropic drug resistance 12
NR	XP_003603455.1	0	Pleiotropic drug resistance protein [Medicago truncatula]
COG	YP_001516786.1	1.00E-32	ABC transporter ATP-binding protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q9M9E1\|AB40G_ARATH	0	ABC transporter G family member 40
trEMBL	tr\|G7JBP0\|G7JBP0_MEDTR	0	Drug resistance transporter-like ABC domain protein {ECO:0000313\|EMBL:AES73706.1}

Sequence

Transcript Sequence

>Glyur000882s00021652.1
ATGGAGAGTGGTGAACTGAGAGTGGGTAGTGCACGAATAGGGAGCTCCAGCATCTGGAGAAGTGGTGCGGTTGATGTGTTTTCAGGGTCTTCACGAAGGGATGATGATGAACAAGAGCTCACGTGGGCTGCGATTGAGAAGCTCCCCACGTATCTACGCTTGACAAGGGGCATACTCACCGAAACAGAAGGTCAACCCACAGAGATTGATATCAACAAACTTGGTCCCCTGCAGAGGAAGAACCTGGTTGAGAGGCTCGTCAAGATTGCAGAGGAAGATAATGAGAAGTTCTTGTTGAAGTTTAGAGAACGCATTGATCGAGTTGGACTTGATATTCCCACAATTGAAGCTGAAGCTCATGTGGGAAGAAGGGCATTGCCCACAATCCTCAACTTCTCCATTAATTTGTTTGAGACCACATTATTGCTGGCACTGGCTGGAAGATTAAGTAAAGATCTGAAGTTTTCGGGTCGAGTTGCGTATAATGGTCATGGGATGGAGGAATTTGTGCCTCAGAGAACATCAGCTTACATAAGTCAAACTGATCTGCACATAGGAGAAATGACTGTCAGAGAAACATTGGCTTTTTCAGCAAGGTGTCAAGGGATAGGAACCCGTTATGAGATGCTGGCAGAGTTATCAAGAAGAGAGAAGGATGCAAACATTAAGCCAGATCCTGATCTTGATATTTATATGAAGGCTGCAGCACTAGAAGGCCAAGAAACCAATGTTGTTACAGATTATATTATTAAGATTTTGGGACTAGATGTTTGTGCTGATACCATGGTAGGGGATGACATGATCCGGGGTATTTCTGGTGGACAAAAAAAGAGAGTCACAACTGGTGAGATGCTAGTTGGACCAGCAAGGGCACTTTTCATGGATGAAATATCAACTGGTTTGGACACACCAGAAACCTACGAGTTATTTGATGATATAATTCTCCTCTCAGATGGACAAATTGTGTATCAAGGTCCAAGGGAAAACGTCCTTGAGTTCTTTGACTACATGGGTTTCAAATGTCCAGAGAGAAAAGGAGTAGCAGACTTTTTACAAGAAGTAACATCAAGAAAAGATCAAGAACAGTATTGGGCAAACAAAGATGAGCCATATACTTTTGTCACTGTTAAACAATTTGCTGAAGCATTTCAATCATTTCACGTTGGTAGAAAACTTGGTGACGAACTTGGTAATCCATTTGACACGTCCAAAGGCCACCCTGCTGTTCTAACCAAAAACAAGTATGGTGTGAGCAAGAAGGAACTCTTGAAAGCATGTGTATCCAGAGAATTATTACTCATGAAAAGGAATTCGTTTTTCTATATTTTCAAGATGTGGCAGTTGATTTTCACTGGCCTCGTAACAATGACATTGTTCCTGCGAACTGAGATGCACCGGGACACAGAATCCGATGGTGGGATCTATATGGTTGGGAGGAACATCATTGTTGCAAACACAGTTGGGTCATTTGCTTTACTTGCTGTTCTTGTCATGGTTGATGTGAAGAATTGGTGGTTATGGGGTTACTGGGTCTCTCCAATGATGTATGGACAGAATGCTATAGCTGTGAATGAATTCCTCGGAAAGAGTTGGTCACATATTCCACCTAATTCAACAGAACCATTAGGAGTGCAGCATATTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTACTATTCAACTTCCTTTTACCATTGGCCTTACATTATCTTGACCTGTAAGATGATGAGTATAACAATTTTGATGCAGCCAAAGGGAATGGAAGTCGAAGAAGTTTCAAGAGTTGCAGCTGATCACAATAGGAAGAAGGGGATGGAAATGAAGTCCAAAGGCATTCTTGAAGATCGTCTTGAACTTTTGAAGGGTGTTAATGGAGCTTTTAGACCAGGAGTTCTGACAGCTCTAATGGGTATAAGTGGAGCTGGTAAAACAACTCTAATGGATGTGTTGTCTGGAAGAAAAACAACAGGGTATATTCAAGGACAAATCACTATATCCGGGTATCCTAAAAAGCAAGAAACTTTTGCTCGCATATCAGGATACTGTGAGCAGAATGATATCCACTCTCCCCATGTTACAGTCTATGAATCCCTCGTTTATTCTGCATGGCTAAGGTTACCCCCTGAGGTTGATTTTGCCACAAGACAGATGTTCATTGAGGAAGTTATGGAGCTGATAGAGCTGACTTCACTAAGAGAAGCGCTGGTTGGATTGCCTGGTGTGAATGGTTTGTCCACAGAGCAGCGCAAGAGGTTAACAATAGCAGTTGAACTTGTTGCCAATCCATCTATTATATTCATGGATGAACCTACCTCTGGCCTTGATGCTAGAGCTGCTGCTATAGTGATGAGAACAGTGAGGAACACAGTGGACACAGGGCGAACTGTGGTCTGCACAATTCACCAGCCCAGCATTGACATATTTGATGCTTTTGATGAGCTACTTCTCTTGAAGCGTGGAGGAGAGGAAATATATGTGGGGCCTTTAGGCCGGCATTGTTCTCATCTCATCAATTACTTTGAGGGAATTAATGGAGTGCCAAAAATCAAGAATGGTTATAATCCTGCCACTTGGATGTTGGAGGTTACTTCAGAAGCACAAGAAGAAGCTCTCGGAGTTAACTTCGCTGAGCTATACAAGAATTCTGACCTATATAGGAGAAACAAGGCCTTGATCAAGGAACTGAATACCCCTCCAGCTAGTTCTAAAGACTTGCACTTCCCCACACAGTACTCTCAGTCTTTCTTAACCCAATGCATGGCTTGCCTTTGGAAGCAGAACCTATCATACTGGCGAAATCCCCCATATAGTGCTGTGAGACTCTTGTTCACAACAGTCATAGCTTTGTTGTTCGGGACAATATTTTGGGACATTGGCTCCAAAAGGGAAAGAAGACAAGACCTATTTAATGCAATGGGGTCCATGTATGCTGCAGTCCTCTTCATTGGGGTACAAAATGCCACATCTGTGCAACCAGTTGTAGCCATTGAGAGAACAGTATTCTATAGAGAAAGAGCTGCTGGAATGTACTCAGCTTTGCCATATGCATTTGGACAGGTTGTTGTGGAGATACCATACATCCTCGTACAGACCCTCGTATATGGGGTTATAGTCAAGTTCTTGTGGTACCTCTTCTTCATGTTCTTCACATTCTTATACTTCACCTTATTTGGAATGATGCTTGTGGGTGCTACCCCGGATCACAACAGGATGCCGGTATGGTGGAGATGGTTCTTCTGGATATGTCCTGTCTCTTGGACCCTGTATGGCTTGGTTATTACACAATTTGGTGATGTAAAAGACCGTATGGAGACTGGAGAGACAGTGGAGGAGTTTGTTAGGAGTTACTTTGGGTATAGAGATGATTTCAAAGGCATAGCTGCTGCTGTGGTCGTTGGTTTTTCGCTCATCTTTGGATTTACCTTTGCTTTCTCAATTAAGGCATTCAATTTCCAAAAGAGATGA

Protein Sequence

>Glyur000882s00021652.1
MESGELRVGSARIGSSSIWRSGAVDVFSGSSRRDDDEQELTWAAIEKLPTYLRLTRGILTETEGQPTEIDINKLGPLQRKNLVERLVKIAEEDNEKFLLKFRERIDRVGLDIPTIEAEAHVGRRALPTILNFSINLFETTLLLALAGRLSKDLKFSGRVAYNGHGMEEFVPQRTSAYISQTDLHIGEMTVRETLAFSARCQGIGTRYEMLAELSRREKDANIKPDPDLDIYMKAAALEGQETNVVTDYIIKILGLDVCADTMVGDDMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDTPETYELFDDIILLSDGQIVYQGPRENVLEFFDYMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYTFVTVKQFAEAFQSFHVGRKLGDELGNPFDTSKGHPAVLTKNKYGVSKKELLKACVSRELLLMKRNSFFYIFKMWQLIFTGLVTMTLFLRTEMHRDTESDGGIYMVGRNIIVANTVGSFALLAVLVMVDVKNWWLWGYWVSPMMYGQNAIAVNEFLGKSWSHIPPNSTEPLGVQHIGIGLELELPLDTCYYSTSFYHWPYIILTCKMMSITILMQPKGMEVEEVSRVAADHNRKKGMEMKSKGILEDRLELLKGVNGAFRPGVLTALMGISGAGKTTLMDVLSGRKTTGYIQGQITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVYSAWLRLPPEVDFATRQMFIEEVMELIELTSLREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGRHCSHLINYFEGINGVPKIKNGYNPATWMLEVTSEAQEEALGVNFAELYKNSDLYRRNKALIKELNTPPASSKDLHFPTQYSQSFLTQCMACLWKQNLSYWRNPPYSAVRLLFTTVIALLFGTIFWDIGSKRERRQDLFNAMGSMYAAVLFIGVQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVVVEIPYILVQTLVYGVIVKFLWYLFFMFFTFLYFTLFGMMLVGATPDHNRMPVWWRWFFWICPVSWTLYGLVITQFGDVKDRMETGETVEEFVRSYFGYRDDFKGIAAAVVVGFSLIFGFTFAFSIKAFNFQKR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00882	18740	27180	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000882s00021652.1	PF00005.22	ABC_tran	139	297	1.50E-05
Glyur000882s00021652.1	PF00005.22	ABC_tran	623	775	1.40E-19
Glyur000882s00021652.1	PF01061.19	ABC2_membrane	920	1070	2.70E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.207
SRR1783600	control	0.181
SRR1783602	moderate drought stress	0.019
SRR1811619	moderate drought stress	0.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.128
DRR006520	Root Summer glycyrrhizin high producing strain	0.185
DRR006521	Root Winter glycyrrhizin high producing strain	0.032
DRR006522	Root Winter glycyrrhizin high producing strain	0.031
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	68.349
SRR2868004	Drought Stress (root)	66.305
SRR2967015	Control (root)	18.323

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.085
SRR9715740	Leaf	0.051
SRR9715741	Leaf	0.000
SRR9715739	Root	0.096
SRR9715742	Root	0.000
SRR9715743	Root	0.128

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.016
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.116
SRR8749030	Uninduced	0.018
SRR8749031	Uninduced	0.039
SRR8749032	Uninduced	0.094

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.914
SRR8400027	Control - Root	5.738