Gene detail

Gene detail information of Glyur000881s00037824.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06710.1	6.00E-55	homeobox from Arabidopsis thaliana
NR	XP_011002298.1	5.73E-94	PREDICTED: homeobox-leucine zipper protein HOX11-like [Populus euphratica]
Swissprot	tr\|A2YW03\|HOX27_ORYSI	7.00E-72	Homeobox-leucine zipper protein HOX27
trEMBL	tr\|U5GR14\|U5GR14_POPTR	4.00E-92	Uncharacterized protein {ECO:0000313\|EMBL:ERP66033.1}

Sequence

Transcript Sequence

>Glyur000881s00037824.1
AAAAGGCCTCCTCAATCCAATTCTCAGTCCAACCTTTTCCCCACTTGTATTTTCCTTCTACATCTCTTTTTCCTCTTCTCTCTGCCTAACTGCCTTGTGTGTACCGGAAGAAGAGAAGGATCAAGATCATGGAGCTTGGCTTGAGCTTAGGATCCTCAAGGCCTTTCGGCTTCATGGAAAACCCTCCTGAAGCTTCCAACNCCAACACCTCCTTATCAATTGGTCCTGTTATTATTATTACCAAACAAAGAGATCAACAGTACCACCAACAACAAAAACAAAGGGAAGAAAACAGTGATAGCTTCACTACTGAAGAAGACCGTGAAGCTACAATATATGAATCCCTTACAAGTCCTAATTCTCTCAAAGCCAATAATAACAACGCAGTTCTGCAGCTTGATCTTCTTCCTCACACACCACCAGCCGTTGCTCCTATGAACTTCTTCCCATTCCAGGTCCCTCCTTTGGTAAACGCTAGTGGTTGTTCAAGGGGCATGGGCATGAACATGCTGCCTGCGGTGGCAACAGCGATAGTGAGAGTGGAGGATGAGGCAGAGGAAGAGGCGGTGCTGTCATCGTCCCCCAACAGCGCGGCCTCGTCAATATTTCAGATGGATCTCTGCATGTTCAGCACANGAGGGAGGGGTTGTTCATCCAGAGCAAGTGATGAAAATGAGAATAGTGGTGATGGCAGAAGCAGGAAGAAGCTAAGGCTCTCTAAGGAACAATCTAATTTCCTTGAGGAGAGCTTCAAAGAACACAACACTCTTAACCCAAAACAAAAGATTGCTCTTGCCAAACAACTCCATCTTCGCCCTCGCCAAGTAGAAGTATGGTTTCAAAACAAAAGAGCAAGGAACAAGTTGAAGCAGACAGAGTTGGACTGTGAGGACTTGAAGAGATGCTGTGACACACTCAAAGAAGANAATAGAAGGCTTCACAAGGAGCTTGAAGAATTGAGAGCTCTGAAGATCACTTCAAAGCCATTCTATATGCAGTTACCAGCNACTACCTTGACTATGTGCCCATCCTGCAGTGAACGTGTTGCCACCAATAATTCCATTATATCCACTCCTTCTAGAACAGTCCATTGCAGCAGGCCAGATACTACTATTGCCAAAACCATAGATNAACCAAAAGCCATTGGTTTCCCCAGGTTTAATCCAATATTCCACTCCACAGCATCTTAAGTTAAATTAACTATATTGAAGGTGGTTCAAGGCAAAGGGTGGTGGGGGTTGATGCTTGGAAACTATGAGATTTTTATTAATAAGTAGGAGTTCTGATATTTGAGTTTTGTTTTTCTAGTTTTAATTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00881	40858	43627	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000881s00037824.1	PF00046.24	Homeobox	191	245	6.20E-15
Glyur000881s00037824.1	PF02183.13	HALZ	247	285	1.30E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.532
SRR1783600	control	27.725
SRR1783602	moderate drought stress	50.081
SRR1811619	moderate drought stress	49.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.520
DRR006520	Root Summer glycyrrhizin high producing strain	29.187
DRR006521	Root Winter glycyrrhizin high producing strain	5.129
DRR006522	Root Winter glycyrrhizin high producing strain	5.064
DRR006523	Root Summer glycyrrhizin low producing strain	23.388
DRR006524	Root Summer glycyrrhizin low producing strain	23.016
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.564
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.560

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.589
SRR2868004	Drought Stress (root)	1.552
SRR2967015	Control (root)	2.467

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.423
SRR9715740	Leaf	0.658
SRR9715741	Leaf	0.852
SRR9715739	Root	17.684
SRR9715742	Root	13.891
SRR9715743	Root	14.682

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.250
SRR8749028	MeJA induced 9h	1.509
SRR8749029	MeJA induced 9h	2.420
SRR8749030	Uninduced	4.977
SRR8749031	Uninduced	9.415
SRR8749032	Uninduced	10.493

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.665
SRR8400027	Control - Root	2.414