Gene detail

Gene detail information of Glyur000880s00024789

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15870.1	0	glycosyl hydrolase family 81 protein
NR	XP_003637157.1	0	Beta-glucan-binding protein [Medicago truncatula]
COG	YP_008154648.1	2.00E-93	hypothetical protein SCE1572_41440 [Sorangium cellulosum So0157-2]
trEMBL	tr\|G8A0L0\|G8A0L0_MEDTR	0	Glycoside hydrolase family 81 protein {ECO:0000313\|EMBL:KEH25260.1}

Sequence

Transcript Sequence

>Glyur000880s00024789.1
ATGATCATAAGCATTGATCTCAGTGTCACTTTGGACATTCCCTCTTCCAACCTGAGCCCTTTTGTGACAGCATCATCAGTGACTGGTGATCTCACACCACTTTCCATCACCACCATCCATGCCATCCTCTCATTCTCATCCAATAATTCCCTCACAAGACACACCTTGAAGCTCAACAATGGCCAGACATGGCTCATATACACATCCTCCCCAATCAGTTTTAACCATAATGGCCCTTCTGAGATTACTACCTCTGATGGCTTTTCTGGCATGATCAGGATGGTAGTGTTGCCTGATTCTGACCCCAAGTATGAGTTAATCCTCAACAGGTTCAGTTCTNGTTACCCTTCTTCTGGGGATGCAGCATTCACAAAGCCATTCTGTGTGGAGTATAAGTGGGAGAAGAAAGGGTGGGGGGAGTTGTTAATGCTTGCTCACCCACTTCAACTCCAGCTTTTGTCTACTAGTGATTGTGATGTGACTGTGCTTCATGATTTGAGGTATAGAAGCATTGATGGGGAGCTTGTTGGTGTTGTTGGAGATTCATGGATGTTGAAAACTAATCCAGTTTCTGTTACTTGGCATTCCACAAGAGGAATCAGAGAAGAACACCATGAGGAGATTTTCTCAGCACTTTCTGAAGATGTGGATGCTTTGAACCCCTTAGGAACAACAACAACAACAACAACAACAACAACAACATCATGCTACTTTTATGGGAAGATTGTAGCAAGGGCAGCAAGGTTGGCATTGATAGCTGAAGAAATATCTTTTCTTGATGCCATACCAGCTACCAGGAAGTTCTTAAAGGAGGCCATTGAGCCATGGTTGAATGGAACTCTCAATGGGAATGGTTTTCTCTATGATGAGAAATGGGGAGGAATTGTTACCAAACAAGGGTCTAAAGATTCAGGTGCAGATTTTGGGTTTGGTATTTACAATGACCATCACTACAATTTGGGGTACTTCCTCTATGCAATTGCAGTGCTTGCAAAGATTGATCCTGCATGGGGAAGGANGTATAAGCCTCAAGCCTATTCACTCATGGCAGATTTCATGAACTTGGGAAGAAGATCAAACTCTAATTACACGCGTTTGAGGTGTTTCGATCTNTACAAGTTGCACTCTTGGGCTGGAGGGTTAATTGAATTTGCAGATGGAAGGAACCAAGAGAGCACAAGTGAAGCTGTGAATGCATACTATTCTGCAGCATTGATGGGTTTGGCGTATGGTGACACTCAACTTATTGCAACTGGATCAACACTAGCAGCATTGGAAATCCATGCAGCTCAAATGTGGTGGCATGTGAAAGAGGGAGAGAAACTCTATGAGGAAGAGTTTGCAAAAGAGAACAAGGTGGTGAGTGTTGTGTGGGCTAACAAGAGAGATAGTGGACTATGGTTTGCACCTCCACAATGGAGAGAGTGTAGGCTTGGTATTCAGGTTTTGCCCTTGTCACCTATTACTGAGGCCTTGTTCTCTGATGTTGGTTATGTGAAGGAGCTTGTGGAATGGACAATGCAAAATCTGAATAGGAAAGGTGTTGGAGAAGGGTGGAAAGGGTTCATCTTTGCCTTGGAAGGAACTTATGATAAGGAGAGTGCATTGCAAAAGGTGAGGGGGTTGAGAGTTTTTGATGATGGGAACTCAATGAGTAATCTGTTGTGGTGGATTCACAGNAGAGTTTTTCGAAAAGATAGTGTTAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00880	83704	87363	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016998 cell wall macromolecule catabolic process

molecular_function

GO:0052861 glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group

GO:0052862 glucan endo-1,4-beta-glucanase activity, C-3 substituted reducing group

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000880s00024789.1	PF03639.8	Glyco_hydro_81	33	560	1.00E-179

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.158
SRR1783600	control	1.187
SRR1783602	moderate drought stress	1.207
SRR1811619	moderate drought stress	1.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.352
DRR006520	Root Summer glycyrrhizin high producing strain	4.605
DRR006521	Root Winter glycyrrhizin high producing strain	0.195
DRR006522	Root Winter glycyrrhizin high producing strain	0.210
DRR006523	Root Summer glycyrrhizin low producing strain	3.182
DRR006524	Root Summer glycyrrhizin low producing strain	3.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.293

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.139
SRR2868004	Drought Stress (root)	2.623
SRR2967015	Control (root)	2.589

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.664
SRR9715740	Leaf	0.162
SRR9715741	Leaf	0.137
SRR9715739	Root	1.011
SRR9715742	Root	3.303
SRR9715743	Root	2.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.910
SRR8400027	Control - Root	0.889