Gene detail

Gene detail information of Glyur000880s00024788

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23740.1	2.00E-100	Oxidoreductase, zinc-binding dehydrogenase family protein
NR	XP_004489284.1	1.73E-171	PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Cicer arietinum]
COG	YP_003584286.1	2.00E-59	zinc-type alcohol dehydrogenase [Zunongwangia profunda SM-A87]
Swissprot	tr\|Q84V25\|ENOXE_FRAAN	6.00E-151	2-methylene-furan-3-one reductase
trEMBL	tr\|Q43677\|Q43677_VIGRA	8.00E-163	Auxin-induced protein {ECO:0000313\|EMBL:AAA87182.1}

Sequence

Transcript Sequence

>Glyur000880s00024788.1
GAACAACCTGCCCCACTCCCCCACACAAAAAATCTTCTCGAATGATCACGAAATTGGAATTTGCTGTGGCTAATTAAGTTCAACTATACAACTCTAACATCCTCTCACTCTTTTCCCCAACCATGGCATCTAACATGAAAGCTTGGGTCTACACAGAATATGGGAACATAGAAGAAACTCTCAAAATTGATCNCAATGTATCAATACCAGACATCAAGGAAGATCAGGTGCTCATCATGGTTGTGGCTGCAGCACTTAATCCTATAGACTACAAAAGGGCTCTTGGCTATTTCAAGAACACTACTCCTTTACCAACTGTTCCAGGGTATGATGTTGCTGGTGTGGTGGTAAGAGTGGGAAGTCAAGTGAGGAAATTTAAGGTTGGTGATGAGGTTTATGGTGATATCAGTGAGCATAGTTTGAACCACCCAAAGGCCATTGGGTCTTTGGCAGAGTACACTGCTGCTGAAGAGAAACTTTTGGCTCACAAACCCTTCAACTTGAGCTTTGTTGAAGCTGCTTCCCTTCCTTTGGCAATCATCACTGCTTATCAAGGACTAGAAATGGTTGAGTTTTCTGCTGGCAAATCTATACTTGTTCTGGGAGGTGCTGGAGGAGTTGGGACCTTTGTCATTCAGCATGTTTGTGGTGCATCTAGGATTGCAGCTACTGCTAGTACTGCAAAACTGGAATTCTTGAGGAACTTGGGAGCTGATTTGCCTATTGATTATACTAAGGAGACTTTTGAAGAACTACCGGAAAAGTTTGATGTGGTGTATGATGCNGTAGGTCAGAGTGAAAGGGCACTTAAGGCTGTTAAAGAAAGGGGTAAAGTTGTGACAATACTGCCACCTGGAACTCCACCAGCTATCCCTTTAGAACTCACTTCAGATGGGGCAGTGTTGGAGAAACTGAAACCTTACTTGGAGAGTGGCAAGGTGAAGCCAATATTGGACCCTAAGAGCCCTTTTCCATTTTCTCAAACTGTGGAAGCATTTTCCTACCTCAGGACTAATAGAGCCACAGGAAAAATAGTCATACATCCCATCCCATAATCATNTGTCATGTTCCTACCTCAGGTTAATTTATGTTTTAATGTCAACATTTCTGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00880	72249	74616	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000880s00024788.1	PF08240.7	ADH_N	34	95	2.20E-10
Glyur000880s00024788.1	PF13602.1	ADH_zinc_N_2	195	306	2.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.144
SRR1783600	control	8.344
SRR1783602	moderate drought stress	14.344
SRR1811619	moderate drought stress	14.471

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.135
DRR006520	Root Summer glycyrrhizin high producing strain	37.309
DRR006521	Root Winter glycyrrhizin high producing strain	14.512
DRR006522	Root Winter glycyrrhizin high producing strain	14.428
DRR006523	Root Summer glycyrrhizin low producing strain	16.666
DRR006524	Root Summer glycyrrhizin low producing strain	16.939
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.083
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.082

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.303
SRR2868004	Drought Stress (root)	0.187
SRR2967015	Control (root)	0.182

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.715
SRR9715740	Leaf	0.606
SRR9715741	Leaf	1.419
SRR9715739	Root	9.377
SRR9715742	Root	8.241
SRR9715743	Root	8.967

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.498
SRR8400027	Control - Root	1.897