Gene detail

Gene detail information of Glyur000880s00024786.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15860.1	8.00E-50	prenylcysteine methylesterase
NR	XP_004514435.1	8.58E-78	PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME-like [Cicer arietinum]
COG	YP_003371043.1	4.00E-07	alpha/beta hydrolase [Pirellula staleyi DSM 6068]
Swissprot	tr\|Q94AS5\|ICME_ARATH	2.00E-59	Isoprenylcysteine alpha-carbonyl methylesterase ICME
trEMBL	tr\|I3SZG5\|I3SZG5_MEDTR	1.00E-77	Uncharacterized protein {ECO:0000313\|EMBL:AFK45657.1}

Sequence

Transcript Sequence

>Glyur000880s00024786.1
CGTCTTTCGACTATACACATATACTCTCATATGCAGTATTCGCGCTACCCAAACCGAGGCATGCAATAAATATAATTCAATTTAATTTATTTTATTATATTATATTTTTCTTCCAATCAAATCTAATCTCCGATATCGCAACTGTCGCCGGCGATGACAGTCCTCTCCGATCGCCGCCGCGTGGTTCCAGCAGCCGACGCAGACGCCCAACCATTACCAGAGTCCGCTCCCAACAATCACCGTGAGAATCCCCGGCGAGTCGCCAGAAAAAACGGCCACCGGCCTCGCCTTGCTCGGCAACGATCCTTGACGAAGGATTTTGAACATGTCGCCACAGAGACTTACATGATCACTCGCCTCACCTTCACGCTTCTTCAATATCTCGGGGTTGGTTACCGTTGGATTACGAGATTTCTTGCCCTTGTATGTTATGCCATGCTACTTATGCCTGGTTTTCTACAAGTTGCATATTACTATTTCTTCTCGAGCAAGGTAAAGCGAAGCATAGTTTATGGAGATCAACCTAGAAACAGGTTGGATCTGTATCTACCTGCNGATGTCAGTGAGCCTAAGCCAGTTTTGATCTTTGTAACTGGGGGAGCATGGATTATTGGGTATAAAGCATGGGGCTCCCTTTTAGGACTACAGTTGGCAGAAAGAGACATTTTAGTGGCATGCATTGATTACAGGTACCTCGTCTCAGTTCAAGAAGTGCAAGATTGAGTCTACAATTTACCTTTGGTCCAACTTGCTCTATGTTTGAGAAATTTTCCTCAAGGAACCATCAGTGACATGGTAAATGATACTTGTCAGGGAATTTCCTTTGTCGTCAATAACATAGCTAATTATGGAGGTGACCCTAATAGGATTTACCTAATGGGACAATCTGCTGGTGCGCATATTTCATCTTGTGCTTTACTAGCCCAAGCAACCAGAGAATCTGGAAAAAGAGATAGTGNTTCTTGGAGCATTTCCCAGTTAAAAGCTTATTTTGGTTTATCTGGAGGATACAACTTATTGGAATTAGTTGATCACTTTCACAATCGTGGCTTGTATCGTTCCATTTTTTTAAGGTGTGTCCCATAAAACTGAGTTTCATTATGGTTATGAGGTGTTAAATTATTTTCCAATCCTTATAACTGTTATTATCATTGTAGCATAATGGAAGGTGAACAATCTTTGAAGAAATTTTCTCCCGAAATCAAAATTCAAGATCCATGCATCAAAGATTCCATTCCTCTCTTGCCCCCTATAATTCTTTTCCATGGAACTGGTGATTATTCCATACCATCGATTGCCAGTGAACGGTTTGCTGATGCTCTTAAGAAGGCAGGGGCAAGAGCTGAGCTGATTCTGTATGATGGGAAAACACATACAGATTTGTTTCTCCAAGATCCACTACGAGGTGGTAAAGATGACCTATTTGATCATGTAGTTGCTTTCGTACATTCCAATGATAGTGATGCTCTTGCAAAGGATGCCACTGCACCCCCAAGAAAACGGCTTGTTCCTGAAATTTTGTTAAAATTGGCTCGCAAGATTAGTCCCTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00880	55879	62239	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15889	PCME	EC:3.1.1.-	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0008236 serine-type peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000880s00024786.1	PF00326.16	Peptidase_S9	28	75	1.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.476
SRR1783600	control	12.601
SRR1783602	moderate drought stress	8.383
SRR1811619	moderate drought stress	8.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.144
DRR006520	Root Summer glycyrrhizin high producing strain	7.932
DRR006521	Root Winter glycyrrhizin high producing strain	3.807
DRR006522	Root Winter glycyrrhizin high producing strain	3.596
DRR006523	Root Summer glycyrrhizin low producing strain	10.004
DRR006524	Root Summer glycyrrhizin low producing strain	10.249
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.877
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.694

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.784
SRR2868004	Drought Stress (root)	8.030
SRR2967015	Control (root)	5.590

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.033
SRR9715740	Leaf	23.357
SRR9715741	Leaf	29.418
SRR9715739	Root	3.801
SRR9715742	Root	5.428
SRR9715743	Root	5.165

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.027
SRR8749028	MeJA induced 9h	14.329
SRR8749029	MeJA induced 9h	16.079
SRR8749030	Uninduced	28.532
SRR8749031	Uninduced	17.289
SRR8749032	Uninduced	16.767

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.824
SRR8400027	Control - Root	12.751