Gene detail

Gene detail information of Glyur000879s00025362

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G23860.2	tubulin beta 8
NR	XP_004496560.1	PREDICTED: tubulin beta-1 chain-like [Cicer arietinum]
Swissprot	tr\|P37392\|TBB1_LUPAL	Tubulin beta-1 chain
trEMBL	tr\|A0A058ZXC7\|A0A058ZXC7_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW46432.1}

Sequence

Transcript Sequence

>Glyur000879s00025362.1
CCTCATTTCGCTCGCAGACGAGGGTTCACTAAACATCCCTTTCTTCTGTGCTTCGCTCCTTTTTCTCTTCTCTCTCTTGAACTCGCTCTCAGTCACTCACTCACTCTAGAACTCGTTCCCCTAACTCAGTGATCAAGATGCGTGAGATTCTACACATCCAGGGAGGACAATGCGGGAACCAGATCGGAGCAAAGTTCTGGGAGGTGGTTTGCGCGGAGCACGGGATCGACTCGACGGGGAGGTACCAGGGGAACAACGACTTGCAACTCGAGCGAGTCAACGTCTACTACAATGAGGCGAGTTGCGGACGATTCGTACCAAGGGCGGTGCTCATGGATCTGGAGCCAGGGACCATGGACAGTGTCAGATCTGGTCCCTACGGTCAGATTTTCCGGCCGGATAACTTCGTCTTCGGCCAGTCCGGCGCCGGAAACAACTGGGCGAAGGGTCACTACACCGAGGGAGCAGAGTTGATTGACTCGGTCCTCGATGTTGTTAGAAAGGAGGCAGAGAACTGTGACTGCCTTCAAGGGTTTCAGGTTTGCCACTCCCTTGGTGGTGGAACTGGTTCCGGAATGGGAACACTCTTAATTTCCAAGATCAGGGAAGAATACCCTGACCGAATGATGCTCACTTTCTCTGTCTTCCCATCCCCTAAGGTATCCGACACTGTTGTTGAACCTTACAACGCAACACTTTCTNTGCACCAGCTTGTTGAGAATGCCGATGAATGCATGGTTTTGGATAACGAAGCTCTCTATGATATCTGCTTCCGCACCCTTAAGCTCACTACTCCAAGCTTTGGAGATCTGAACCATCTAATTTCAGCCACAATGAGTGGTGTAACATGTTGTCTTCGATTCCCTGGTCAGTTGAACTCAGATCTTCGCAAACTGGCAGTGAATCTCATTCCCTTCCCTCGTTTGCATTTCTTCATGGTGGGGTTTGCCCCACTCACATCTCGTGGGTCACAGCAATACAGGGCTCTCACCGTACCCGAGTTGACCCAACAGATGTGGGATGCCAAGAACATGATGTGCGCGGCTGATCCTCGCCACGGTCGTTATTTGACAGCATCTGCCATGTTCCGNGGTAAGATGAGCACCAAGGAGGTCGATGAGCAGATGATCAATGTTCAGAACAAGAATTCATCGTACTTTGTTGAGTGGATCCCCAACAATGTGAAATCTACCGTCTGTGATATCCCTCCAACTGGTCTGAAAATGGCTTCTACCTTCATTGGCAACTCTACTTCTATTCAAGAGATGTTTAGGAGGGTGAGTGAGCAATTCACAGCTATGTTCCGTAGAAAGGCTTTCTTGCATTGGTACACTGGAGAGGGTATGGATGAGATGGAGTTCACTGAGGCAGAAAGCAACATGAATGATCTTGTCTCTGAGTACCAGCAGTACCAAGATGCAACTGCAGATGATGAGGGGTATGACTATGAAGACGAGGAAGAAGTTCAGGAGGAGGATGCTTAAACTGTGTAGTATTTTGGAAGGTGTTCTTTGTTTGTGTTTGGTGTGTGTGATACTATGTTGTCTTGTTCTCCCCCAACCTGAATGCCTTTTTCGGGGGGGTTTTGGATTGTTTTTTGGNGCTTTGCCTTTGTGGCTATGGTAGTGCTAGGATCTTTATTTTTATGCATGTTTCCATTGTTAAAATGACGCCCTTTTAATTTCTGGATGATTGAAGCCTAGATAATATTCTTGCCTAGATATCATTCTTCTTGAGTTCTTGTTAAGGGTTTGGATGATCCCGTTTAGTTCTTGGAATCATGGAATCATCGCTATTACTAATCAAGAGCAAAAATTCCTGTCAATGAAGCTGGACCCTTAAAGTGAATTGAACCATAAAGAGAAGCTTCAAGACATTTGGTTGTGGTGAATTAAAAAGATCCACCGCGTTCANGATGCAGTGGTGAATTTAGGTGGGCAGTTGCGGGGTTAACTCNATCGAGAAAATCCGTTCATATAATTCGGTTCTTGCATTTCAAGACTAATAATTACGATTCAGTTTGAACCTTGCGTGCCATTCGAAAACTGTAATGCGGGCTATGTTGCAGCCATTTTCTCATCCAAACCGCTAGTTTCCACGTGAATTCGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00879	92933	95704	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007017 microtubule-based process

GO:0051258 protein polymerization

cellular_component

GO:0005874 microtubule

GO:0043234 protein complex

molecular_function

GO:0003924 GTPase activity

GO:0005200 structural constituent of cytoskeleton

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000879s00025362.1	PF00091.20	Tubulin	3	222	5.80E-71
Glyur000879s00025362.1	PF03953.12	Tubulin_C	261	382	8.20E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	267.736
SRR1783600	control	269.593
SRR1783602	moderate drought stress	156.824
SRR1811619	moderate drought stress	156.777

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	214.848
DRR006520	Root Summer glycyrrhizin high producing strain	212.771
DRR006521	Root Winter glycyrrhizin high producing strain	75.036
DRR006522	Root Winter glycyrrhizin high producing strain	72.735
DRR006523	Root Summer glycyrrhizin low producing strain	129.972
DRR006524	Root Summer glycyrrhizin low producing strain	129.973
DRR006525	Leaf Summer glycyrrhizin high producing strain	57.682
DRR006526	Leaf Summer glycyrrhizin high producing strain	56.941

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	366.055
SRR2868004	Drought Stress (root)	190.051
SRR2967015	Control (root)	215.182

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	95.459
SRR9715740	Leaf	37.546
SRR9715741	Leaf	62.729
SRR9715739	Root	267.854
SRR9715742	Root	245.275
SRR9715743	Root	242.075

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	168.754
SRR8749028	MeJA induced 9h	84.400
SRR8749029	MeJA induced 9h	80.045
SRR8749030	Uninduced	6.039
SRR8749031	Uninduced	2.158
SRR8749032	Uninduced	7.286

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	315.536
SRR8400027	Control - Root	326.689