Gene detail

Gene detail information of Glyur000879s00025355

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34930.1	1.00E-71	disease resistance family protein / LRR family protein
NR	XP_003638367.1	0	Receptor-like protein kinase [Medicago truncatula]
COG	YP_004775215.1	5.00E-47	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	3.00E-99	Receptor-like protein 12 (Precursor)
trEMBL	tr\|G8A217\|G8A217_MEDTR	0	Receptor-like protein kinase {ECO:0000313\|EMBL:AES85505.1}

Sequence

Transcript Sequence

>Glyur000879s00025355.1
ATGGGGGGAAGATACGTAAGTGCTGCTGCATGTGCAGTGCTTTTGGTGTTGGCTATAACTGCACAGATATGCTGGTGTGCAAGTTCGAGCGTCCCCTGCATAGAACGAGAGAGGAAAGCTCTTCTCGAGTTCAAAGCATCCTTTCTGAAAGATCCATTAAACAGGCTTTCCTCTTGGAATGACACTCACTGTTGCCAATGGGAAGGCATAGCATGCGACAATGTCACTGGACATGTTGTCAAGCTTGATCTCAGGAGTCCTTGTTACTCCTCACCACCATCTCAGTGGCGTGAAGGAGACTCTACCATTCCGGAAGAGTGTTCCACCATTGTATACGAATATATTTCTGTATATGCTCCAAATGTTAATCCATCTTTGTTGGAATTGGAATACTTGACTTATTTGGACTTGAGTGGAAATGTTTTTTATTCGAGTCCAATTCCTACGTTCCTTGGTTCCATGAGACGTCTCACCTATCTTTCTCTCTCTAGAGCAAATTTTAGTGGGAGGATTCCAAGCAGTCTCGGGAATCTCAAGAACCTGCGCCTTCTTGATCTCAGTGGAAGTTTCCCTGATTTACAAACCAACGACACCAGTTGGATGTCTGAGCTTCATTCACTGGAACACCTTTACATGAGTGGTGTTGACCTCGGGGAAGAAGCACACAATCTGTTCCAGAAGCTTATACATCTTGATCTTTCATACAATGGGCTTCGTGGTCCAATTCCTGATGCCTTTCGAAATCTGTTTCCCCTTGAGTCTCTCAACCTCGTTGGAAACAGTTTGACTTCAATCCCATCATGGCTTGCTGAGTTGAAGAGCCTTGTCTACCTTGATCTTGGATCGAATGAACTAGCTCGCATGGAATGTTCTCTATCATCTATTATAAGAGACATGTGCCACCTAAGAAGCTTATCTTTATCAGGAAATAAGCTTCGAGGAGAACTAATGGGACACTCTGAATTATCTGGATGCTCTAGATATGATTTGGAGGAATTGGATTTAGGTGATAATGAAATTAGTGGTCGCTTGCCTACTTGGTGGTTGGGGCAGCTTGNAAATCTAGANNGNCTTGATCTTTCAAACAATTCNTTTGATGGCCCCATTCCTCAATGTCTCGGTCAACTTGTCNATTTGNTCGAATTAGATCTTTCTTCAAACAAGTTGGATGGAATAATGCCTACTTGGTTGGGGCAACTGTCAAAGTTGGGATGGCTAGATCTATCCAACAATAAGTTGGACGGGCCCCTTCCTATTAGTATTGGACAACTTGTAAATCTAGAAAGTCTTGATCTTTCAAGCAATTCCTTTGATGGCCCCATTCCTCAATGTCTCGGTCAACTTGTCAATTTGTTCGAATTAGATCTTTCTTCAAACAAGTTGGATGGAATAATGTCTATTGGAAAAGGATGGTCTTCAGTTGCGCCCTCTTTAAATCTCCGGTATTTGAGTCTCTCCAATAACCAAATCAGTGGTTCACTTCCAGAAAATATTGGCCATATGATGCCTTCTTTGACCTACTTGTCTCTTGGAAACAACTTCTTAAATGGTTCGATCCCAATCTCTCTGTGCCAAACTGAGCTGCGAAGCCTTGACCTTTCAAAGAACAACTTATCCGGTGAAATTCCAAATTGTTGGAAAGATAATCAAGGAATATGGGAAGAAATAAATTTGTCATCCAACAAACTATCTGGAGTGTTTCCAAGCTCATTCGGGAATCTTTCCTCTTTGTTTTGGTTGCATTTGAACAATAACAGCCTTCAAGGGGAGCTTCCAATGTCTTTGAGAAATTTGAAGCAATTGTTGATTTTGGATCTTGGTGAGAATCAACTTTCTGGGATTATACCGTCATTATGGACCGCACACACCTTTCCTACACTACAAATTCTTAGATTGCGGAAAAATATGTTGAGTGGTAGCATTCCTTCACAACTTTGCCAACTCACATCGTTGAAAGTTTTGGACCTTTCTCGTAACAAATTAGAAGGTTCAATACCTCGGTGCATAGGCAATCTTAGAGGAATGACTTTGAACAACTCGTCAGATCCCATGCAGCCATACCAGTCCATGGCAAAGGCTCCTAGTCCAGGACCATCTAGTGAGTTTCTTGCAGAGGCTCCTTCTGTGGTTTATGCAGATCCTCCTACATGGTCTACTCAAGATGTCAAAGAAGTCATGAAAGGGACAGAACTTGAGTATACCAAAATCGTGAAGCTTGTAGTCAACATGGACTTGTCTGAAAATAATTTGGTTGGATCTATTCCCAATGAAATTACTTGGCTCACAGGATTGCATGGCCTGAATCTGGCAAACAATCAATTGAAAGGAGAGATCCCTAAGATGATAGGGGATATGAAATCACTGGAATCATTGGATATGTCTCATAACCAACTCTCAGGCACAATTCCAAACAGCATGCCCGCTTTAACTTCACTAAGTCATTTAAACTTGTCACAAAATAACCTTTCAGGACCTATTCCCAAAGGTAATCAATTTTTAACACTGGATGACCCATCTATTTATGCGGATAACCCATATCTTTGTGGGTCTCCACTCCCAAATAAATGTCCCGGTGATATTTGGAATCGAGCTCCTGAAAGTAAAGGTAGTGAAGATGAAGATGGCAAGAAAGATAAGGCAGAAAAAGTATGGTTCTANTTTGTCATAGCAGCTGGCTTTGCAACTGGTTTCTGGGGATTTTTTGGAACTCTACTGTGGAAGAAGAATTGGAGGCATGCTTACTTTAGATGGGTGGAAGATGCAGCTGACAAGATTTATGTGACAACTGTAATAAAATTTGCAGAGCTTAAAAAGCGGATGATGAGAAACCATGTTCACGGGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00879	61274	64827	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000879s00025355.1	PF08263.7	LRRNT_2	36	73	2.00E-13
Glyur000879s00025355.1	PF13855.1	LRR_8	227	285	1.60E-09
Glyur000879s00025355.1	PF13855.1	LRR_8	379	436	1.50E-09
Glyur000879s00025355.1	PF12799.2	LRR_4	479	515	1.90E-06
Glyur000879s00025355.1	PF13855.1	LRR_8	527	587	6.60E-07
Glyur000879s00025355.1	PF12799.2	LRR_4	625	662	1.00E-07
Glyur000879s00025355.1	PF13855.1	LRR_8	763	822	5.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.398
SRR1783600	control	0.422
SRR1783602	moderate drought stress	0.027
SRR1811619	moderate drought stress	0.040

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.534
DRR006520	Root Summer glycyrrhizin high producing strain	0.484
DRR006521	Root Winter glycyrrhizin high producing strain	0.545
DRR006522	Root Winter glycyrrhizin high producing strain	0.531
DRR006523	Root Summer glycyrrhizin low producing strain	0.775
DRR006524	Root Summer glycyrrhizin low producing strain	0.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.786
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.267

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.174
SRR2868004	Drought Stress (root)	1.736
SRR2967015	Control (root)	1.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	88.436
SRR9715740	Leaf	80.599
SRR9715741	Leaf	107.827
SRR9715739	Root	0.697
SRR9715742	Root	5.149
SRR9715743	Root	3.575

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.354
SRR8749028	MeJA induced 9h	0.516
SRR8749029	MeJA induced 9h	0.479
SRR8749030	Uninduced	0.277
SRR8749031	Uninduced	0.177
SRR8749032	Uninduced	0.675

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.797
SRR8400027	Control - Root	0.672