Gene detail information of Glyur000879s00025352 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52300.2 | 2.00E-10 | CAP160 protein |
| NR | KEH43709.1 | 1.92E-106 | hypothetical protein MTR_1g100623 [Medicago truncatula] |
| Swissprot | tr|Q04980|LTI65_ARATH | 1.00E-10 | Low-temperature-induced 65 kDa protein |
| trEMBL | tr|A0A072VNW0|A0A072VNW0_MEDTR | 7.00E-107 | Uncharacterized protein {ECO:0000313|EMBL:KEH43709.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00879 | 49341 | 52945 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.291 |
| SRR1783600 | control | 8.949 |
| SRR1783602 | moderate drought stress | 42.962 |
| SRR1811619 | moderate drought stress | 42.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.945 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4899.570 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4749.947 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.148 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.468 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.021 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.528 |
| SRR2868004 | Drought Stress (root) | 9.335 |
| SRR2967015 | Control (root) | 17.183 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 35.667 |
| SRR9715740 | Leaf | 49.835 |
| SRR9715741 | Leaf | 30.139 |
| SRR9715739 | Root | 0.611 |
| SRR9715742 | Root | 11.697 |
| SRR9715743 | Root | 9.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.691 |
| SRR8749028 | MeJA induced 9h | 71.166 |
| SRR8749029 | MeJA induced 9h | 56.716 |
| SRR8749030 | Uninduced | 28.939 |
| SRR8749031 | Uninduced | 6.594 |
| SRR8749032 | Uninduced | 22.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.101 |
| SRR8400027 | Control - Root | 18.911 |