Gene detail information of Glyur000879s00025347 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23750.2 | 1.00E-34 | Remorin family protein |
| NR | NP_001236279.1 | 3.69E-95 | uncharacterized protein LOC100305501 [Glycine max] |
| Swissprot | tr|P93788|REMO_SOLTU | 7.00E-74 | Remorin |
| trEMBL | tr|C6SVC8|C6SVC8_SOYBN | 1.00E-95 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G38080.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00879 | 15204 | 20324 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000879s00025347.1 | PF03766.8 | Remorin_N | 67 | 117 | 1.40E-05 |
| Glyur000879s00025347.1 | PF03763.8 | Remorin_C | 120 | 227 | 1.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.376 |
| SRR1783600 | control | 20.465 |
| SRR1783602 | moderate drought stress | 38.162 |
| SRR1811619 | moderate drought stress | 37.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 89.214 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 85.542 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1087.159 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1056.506 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 114.256 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 109.783 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 235.515 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 227.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.454 |
| SRR2868004 | Drought Stress (root) | 43.832 |
| SRR2967015 | Control (root) | 65.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 78.354 |
| SRR9715740 | Leaf | 93.194 |
| SRR9715741 | Leaf | 75.566 |
| SRR9715739 | Root | 4.580 |
| SRR9715742 | Root | 25.105 |
| SRR9715743 | Root | 21.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.225 |
| SRR8749028 | MeJA induced 9h | 37.267 |
| SRR8749029 | MeJA induced 9h | 23.033 |
| SRR8749030 | Uninduced | 43.914 |
| SRR8749031 | Uninduced | 16.403 |
| SRR8749032 | Uninduced | 17.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.835 |
| SRR8400027 | Control - Root | 41.907 |