Gene detail information of Glyur000879s00025346 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61250.1 | 1.00E-68 | myb domain protein 17 |
| NR | XP_007143400.1 | 6.19E-170 | hypothetical protein PHAVU_007G069400g [Phaseolus vulgaris] |
| Swissprot | tr|Q7XBH4|MYB4_ORYSJ | 2.00E-62 | Myb-related protein Myb4 |
| trEMBL | tr|V7BCT8|V7BCT8_PHAVU | 2.00E-170 | Uncharacterized protein {ECO:0000313|EMBL:ESW15395.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00879 | 13812 | 15922 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000879s00025346.1 | PF00249.26 | Myb_DNA-binding | 14 | 61 | 3.90E-17 |
| Glyur000879s00025346.1 | PF00249.26 | Myb_DNA-binding | 67 | 112 | 4.50E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.159 |
| SRR1783600 | control | 0.207 |
| SRR1783602 | moderate drought stress | 0.198 |
| SRR1811619 | moderate drought stress | 0.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.299 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.082 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.910 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.631 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.827 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.203 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.632 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.718 |
| SRR2868004 | Drought Stress (root) | 0.488 |
| SRR2967015 | Control (root) | 0.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.398 |
| SRR9715740 | Leaf | 0.264 |
| SRR9715741 | Leaf | 0.170 |
| SRR9715739 | Root | 0.223 |
| SRR9715742 | Root | 0.095 |
| SRR9715743 | Root | 0.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.572 |
| SRR8749028 | MeJA induced 9h | 0.282 |
| SRR8749029 | MeJA induced 9h | 0.257 |
| SRR8749030 | Uninduced | 0.361 |
| SRR8749031 | Uninduced | 0.427 |
| SRR8749032 | Uninduced | 0.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.511 |
| SRR8400027 | Control - Root | 0.839 |