Gene detail

Gene detail information of Glyur000878s00027523

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G05200.2	0	glutamate receptor 3.4
NR	XP_004487403.1	0	PREDICTED: glutamate receptor 3.4-like isoform X1 [Cicer arietinum]
COG	YP_007133144.1	2.00E-31	amino acid ABC transporter substrate-binding protein, PAAT family [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q8GXJ4\|GLR34_ARATH	0	Glutamate receptor 3.4 (Precursor)
trEMBL	tr\|G7IU03\|G7IU03_MEDTR	0	Glutamate receptor {ECO:0000256\|PIRNR:PIRNR037090}

Sequence

Transcript Sequence

>Glyur000878s00027523.1
CGCAGTTATATTTTNCTTTTGGCTACTGACACAGTTGTTTCATTCTTCAATCACATGCCTTAAAGTTCAGAACTGTTGCAACTTGCAAGCTTTCANCCCTTTAAGTTTTGGCCTCTATGAGGTGCTGAGTTCTGATGCTGGTTTAAACTGAAGAACCTATCAAGCTGCAAATCGCAGGCTTTCAGAGCTTTTCTCTCAAAAAATGGAGGTGCTCAGGGTCAGGGGGGTGTTGTTCCTCTTGGTTTTCTGCTTCTTGTGGGTTCCCAAGGGAGTGGTGGGAAGGACAGGAAGTACCATTGGGAACTCCACTGTTTCTTCGAGACCCAGTGTTGTGAGAATTGGAGCACTGTTTACTTTTGATTCTGTCATTGGAAGGTCGGCTAAAGCGGGAATCTTGGCTGCAATTGAAGATGTCAATGCTAATAGAACCATTCTCCCTGGCATTAAACTGGATNTTATCTTACATAATACAAATTGCAGTGGGTTTGTTGGAACAATAGAAGCTTTGCAGTTGATGGAGAATGAAGTGGTTGCTGCTATTGGTCCACTGTCCTCTGGAATAGCACATGTCATCTCTCATGTTGTTAATGAACTCCACATACCTCTTCTTTCATTTGGGGCAACAGACCCTTCTCTATCTTCTCTTCAGTACCCATATTTTGTCCGCACCACCCACAGTGACTATTTTCAGATGTATGCAATTGCAGATCTGGTTGAATACTATAGATGGAGGGAAGTAATTGCCATTTTTGTAGATGATGATAATGGTAGAAATGGGATTTCAGTGCTGGGAGATGCGCTGGCGAAGAAACGTGCCAAGATCTCTTACAAGGCTGCATTCCCTCCTGGAGCATCCAAGAGTGATATCAGTGACTTGTTAAATGGAGTGAACTTAATGGAATCACGTGTCTATGTTCTTCATGTTAATCCTGATTCTGGTTTGGCAATTTTCTCTACTGCCAAGAAGCTTGGAATGATGACCAGTGGCTACGTGTGGATTGCGACAGACTGGCTTCCTTCAGTGCTGGATTCAATGGAGCCAGTTGACACCAACACATTAAATCTCCTACAAGGAGTTGTAGCTTTGCGCCATCACACTCCTGATACTAGTCTCAAAAGGAGCTTTTTCTCCAGGTTGAAGAACCTAAAAGGCGTGGAGACCGCAAGCTTCAATTCTTATGCATTATATGCATATGATTCTGTTTGGTTAGCAGCCTATGCTCTTGATGCTTTTCTCAAAGAAGGTGGAAACACATCTTTCTCCTCTGACCCGAAGTTGCGCAACACGAATGGAAGCATGTTGCATCTGTCATCNCTCCATATTTTTGACGGTGGTCCATTGTTTCTCCCCACAATTTTGAGAATGAACTTCACTGGTTTGAGTGGTCAAATTCAGTTTGATATGGAGAAGAATCTAATTCATCCAGCATATGATGTCCTTAATATCGGTGAATCTGGATCCCGGAGAGTTGGCTATTGGTCTAATTACTCCGGTTTGTCAGTTATAGCNCCAGAAATCTTATATAAGAAACCACCTAACGCTTCAACAAGCAATCAAAAACTGTATAGTGTTGTGTGGCCTGGAGAAACTATAGCTACCCCTAGAGGGTGGGTATTCCCCAACAATGGAAAGCCACTGCGAATAGCAGTGCCTCACAGAATAAGCTACTTGGAGTTTGTTTCTAAAGACAAGAATCCCCCTGGAGTTAAAGGCTTTTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTTCCGCGACAATATATATTATATGGAGATGGTAAAAGACTTCCCAACTACAACGAGCTTGTCAATCAGGTTGCACTAAATAACTTTGATGCAGCTGTTGGAGATGTTACAATTGTCCCAAACAGAACAAGGATTTTGGATTTCACTCAACCTTTCTTGGAATCTGGGCTGGTAGTTGTTGTTCCTGTCAAGGAGATGAAATCAAGCCCTTGGTCTTTCCTCAAGCCATTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTCTTTCTTTTTGTGGGAGCTGTTGTATGGATTCTTGAGCACAGGCACAATCCAGAGTTCCGCGGTCGACCGAAGAAACAAATTATGACAGTCTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGGTCTTGGGAGATTGGTGCTACTCGTATGGCTTTTTGTGGTGTTAATCATCAACTCAAGCTACACAGCAAGCTTAACATCCATCCTCACAGTGCAGCAACTGTCATCACAGATTGAAGGAATTGACAGCTTGATCTCAGGTACTCAACCAATTGGGATTCAAGAAGGGTCATTTGCAAGGAAGTATCTGATAGATGAACTCAATATACAAGCATCTAGGATAGTTATTTTAAAAGATCAGGAAGCATATGTTGATGCCCTTATGCGTGGACCAAAAGGTGGAGGGGTTGCGGCAATTGTTGATGAGCTTCCTTATATTGAGCTCTTTATGTCCAATAGCAACTGTAAGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGATATGTCAACTGCCATTCTTCAACTCTCTGAGAATGGTGACCTGCAGAAGATCCATGACAAGTGGCTTCTGAGACATGATTGTGCTGCAAAAGTGGATGATGTTGACTCAAACAAACTATCTCTTAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGAATTGCATGCCTCCTTGCTTTGATTGCATTCTCTGTTAGAGTGTTCTGTCAATACATGAAGTTCATCCCAAAAGAGCCTAAGGAAACTGATGAGGAAATTCAATCAGTTTCATCCAGGCCTAAAAGAAGCTTCCGAACTAGAAGCTTCAAGGACTTGATTGATTTTGTGGATAAGAGAGAGAGAGAAATCAAGGAGATACTTAGGGAGAAGGGTAATAAAAGGAGACGCAGCCAGAGCTTAGATGGACAATCCAGTTCACCCACGGCCTAAGTAACCATATATGTATATTTTTGTCTCTGCCTTCTTTTATTTCTCTCTCTTTTTTTTTTTTTTGCTATACCATAGTGACAGTATTGACACAAATTTGTCTATACTGAAATATTTATATTCCTTCCTTCTTGGGTAGGACATTATGACTGTAAGATTATCACTAACACAGTATAAAAAAGGCAAACAATCTTGATCTACATTCCTAACCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00878	51797	56918	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0004970 ionotropic glutamate receptor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000878s00027523.1	PF01094.23	ANF_receptor	61	414	2.20E-73
Glyur000878s00027523.1	PF00497.15	SBP_bac_3	503	820	6.00E-21
Glyur000878s00027523.1	PF00060.21	Lig_chan	599	853	2.70E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.611
SRR1783600	control	4.608
SRR1783602	moderate drought stress	8.173
SRR1811619	moderate drought stress	8.124

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.181
DRR006520	Root Summer glycyrrhizin high producing strain	9.022
DRR006521	Root Winter glycyrrhizin high producing strain	5.572
DRR006522	Root Winter glycyrrhizin high producing strain	5.272
DRR006523	Root Summer glycyrrhizin low producing strain	12.046
DRR006524	Root Summer glycyrrhizin low producing strain	12.360
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.119
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.320
SRR2868004	Drought Stress (root)	10.686
SRR2967015	Control (root)	13.040

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.435
SRR9715740	Leaf	15.376
SRR9715741	Leaf	16.789
SRR9715739	Root	2.812
SRR9715742	Root	14.263
SRR9715743	Root	12.206

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.154
SRR8749028	MeJA induced 9h	0.266
SRR8749029	MeJA induced 9h	0.062
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.232

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.721
SRR8400027	Control - Root	10.639