Gene detail

Gene detail information of Glyur000877s00023932

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74520.1	8.00E-10	HVA22 homologue A
NR	AES90575.2	1.82E-132	TB2/DP1, HVA22 family protein [Medicago truncatula]
Swissprot	tr\|P0C2F6\|RNHX1_ARATH	1.00E-14	Putative ribonuclease H protein At1g65750
trEMBL	tr\|G7JV27\|G7JV27_MEDTR	7.00E-133	TB2/DP1, HVA22 family protein {ECO:0000313\|EMBL:AES90575.2}

Sequence

Transcript Sequence

>Glyur000877s00023932.1
ATGAGTACCTTTGTAGATGATGCAGTTTCTGACATCTGGATCTGGGGGCACTCTGCAGCGGGGGATTATTCTGCAAAATCAGCCTATAAGTGGTTGAATGAGCAGGCTGATCCTGGAAGCACCTATGCTTTCAGCTGGTTCGCTCTTTGGAAATTGCGTTTACCTGAGAATATTAAGCTCTTCTTCTGGATGGCTCTTCATGAATGCTTACCAACAAACCAGTTCCGTGTTGATCGCCATTGCACTTTGGACCCTTCATGTCACCGTTGTGGCCATCTATCCGAAACTCTACTCCATACCTTGAGGGATTGTCAGGAAGCTAATAAGATTTGGAGAATGTGTGGCTGGGATCAGCAACCAGATTTTTTTAATCTTGATTGCATCACATGGATATGTTCTAATATTCATGGGAACCAGGGCACTGAATTTGCAGTCATCTGCTGGCCTCTTCTTGCTCTGGGTTATCCTCTGTTCCAGTTCTGGCCTTACATTAAGCTAATGATCATCTTCTGGCTCATCATACCAGACTTTGGACGAGCTTCTTATGTCTATAATAACCTTTTTCGCTCATGCATCTTCATGAAACCAAAAACAGTCATATGCAGGTTAAATAACTACTGGAGGCAGTTTTTTGTTGAGAAAGATAACTTTTTACTGCATGCGGAGACATACATAAAAGAGAATGGAACAGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTACAAACCTAAAGCAGAAGCAACGAATGCAATTAGAGCTACTCATAATAAAGAAATGCAACAGACAAATGACAAAAGACTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGGTTGTAGAGAAAAAAGAAATTCCTGCAGGCAAGCAAGATATTCCTGTCATGCCTAACATTGAGCCAAGTCAAAAAACTTCATCAGCCATGGTGGAAACCAAAGAAATAGAGGGGAAAGACACAGCTGGTGGAGAGCTTCCTCAGAGTTCTACACACAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTCAGATAACAACTACAAGTGAGAAAAACTTGAATACCCACTTTCTTGGGAAGAAACACGGGGCTACTTATGAAGCATTGAAAGCAAAGAATCAACCTAAAGTAGTCATGGATCATAAGAACACAATGTACAAACCTAATGCAGAAGCAACGAACGCAATTAGAGCTGCTGATAATAAAGAAATGCAACAGACAAATGACAAAAGACTCCAAACAGAGCACAAAGACATCAAGGATTTGGAGGTTATAGAGAAAAAAGAAAATCCTGCGGGCAACCAAAACACAATGTACAAACCTGAAGCAGAAGCAACAAATGCAATCAGAGCTACTGATAATAAAGAAATGCAACAGAACGCAATGTACAAACCTAAAGCAGAAGCAACAAATGCAATCAGAGCTACTGATGATAAAGAAATGCAACAGACAAATGACAAAAGACTCCAAACAGAGCACAAAGACATCAAAGATTTGGAGGTTATAGAGAAAAACGAAATTCCTGCTGGCAAGCAGGATATTCCTGCCATGCCTAACCTTGCGCCAAGTCAAAAAGCTTCATCAGNCATAGTGGAAACCAAAGGAATAGAGGGGAAATACACAGCTGGTGGAGAGCTTCCTCGTCCTCAGAGTTCTACACACAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTCAGATAACAGCTTCANGTGAGAAAAACTTGAATTCCCATCTTCTTGGGATGAAACACAGGGCTGCTTGTGAAGCATTGAAAGCAAAGAATCAACATACTCCGCAGAAGCCGAAAATCTGTCANTCCAAAGAGGAAATGAAACAGAAGAACGTTATCAACCAGCCAAATTCCAATGCCAAGAATCGAGAGANTATTGCTAACAACGGGTTGAAGAAAAAAGTAGTCATGGATCATAAGGTGCAAGAACCAAAAAGGAACCTGTCTGAACCCGTTAGGAGAGACAATTCCAAATTAAAATGTGAAGTCTGTAATGTTAGACTTAGAGAGGTTGACATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00877	42042	60581	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000877s00023932.1	PF13966.1	zf-RVT	23	111	1.00E-10
Glyur000877s00023932.1	PF12874.2	zf-met	340	364	8.90E-08
Glyur000877s00023932.1	PF12874.2	zf-met	563	587	4.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.646
SRR1783600	control	19.595
SRR1783602	moderate drought stress	12.605
SRR1811619	moderate drought stress	10.876

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.667
DRR006520	Root Summer glycyrrhizin high producing strain	51.134
DRR006521	Root Winter glycyrrhizin high producing strain	14.256
DRR006522	Root Winter glycyrrhizin high producing strain	14.543
DRR006523	Root Summer glycyrrhizin low producing strain	63.207
DRR006524	Root Summer glycyrrhizin low producing strain	53.963
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.078
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.886

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.783
SRR2868004	Drought Stress (root)	6.316
SRR2967015	Control (root)	5.309

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.953
SRR9715740	Leaf	54.024
SRR9715741	Leaf	60.419
SRR9715739	Root	2.880
SRR9715742	Root	13.499
SRR9715743	Root	11.382

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.563
SRR8749028	MeJA induced 9h	12.474
SRR8749029	MeJA induced 9h	16.079
SRR8749030	Uninduced	3.967
SRR8749031	Uninduced	2.662
SRR8749032	Uninduced	2.470

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.283
SRR8400027	Control - Root	6.567