Gene detail

Gene detail information of Glyur000877s00023930

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G23970.1	1.00E-55	Class I glutamine amidotransferase-like superfamily protein
NR	KHN46248.1	2.76E-127	Putative glutamine amidotransferase [Glycine soja]
COG	YP_169906.1	1.00E-33	glutamine amidotransferase [Francisella tularensis subsp. tularensis SCHU S4]
Swissprot	tr\|Q764B9\|ASB2_ORYSJ	4.00E-07	Anthranilate synthase beta subunit 2, chloroplastic (Precursor)
trEMBL	tr\|I1KQX3\|I1KQX3_SOYBN	8.00E-128	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G07140.1}

Sequence

Transcript Sequence

>Glyur000877s00023930.1
GAAAAAAAAAAACTCCTCTCATCTGCACTTTCTCTCTCTAAGGAAGATCCTAGAGAGAGAAAGCATAGGCGAATCAGCTACAATCAGAAAAATGGAGAGAATGGGAGGGAAGAGGTTTGGGGTGTTGCTGTGCGCAGAGGATTCGGAGTATGTGAAGAAGGTGTACGGAGGGTATTTTGGGGTGTTCGTGAGAATGCTGGAGGAGGAAGGGGAGACTTGGGACGTGTACAAGGTGGCGTGTGGGGAGTTCCCTTGCGATGATGAGTTGGGCCTCTACGATGGATTCGTGATCACTGGCAGTTGCAGTGACGCACATGGAAACGACNCATGGGTCCGTGACCTCCTCACCTTGCTTCATAAATTGAACTCCATGAACAAGAAAATCCTCGGCATTTGCTTCGGCCACCAGATACTTGGGCGTGCATTAGGAGGGAAGGTGACTCGCTCTCCTACTGGTTGGGACATTGGTGTCAGAACCATAACTTTGTCATCATCTTTGCCCCTGCCCCTCTCTTCTCTCGAACTTCCATCAAGGCTTTCCATCATCCAATGCCACAGGGATGAGTTAAGAGAGCTACCTGCGAAGGCAGAAGTGATTGCTTGGTCGGATAAGACAGGAATTGAGATGTTCAGGTATGGAGATCACATTATGGGCATCCAAGGTCACCCTGAGTACTCCATAGACATTCTCATGCACCTCATTGACCGAACATTTTGCTGTGAAAACAAGGGAGAAGGCTGCTTTGTGGGAACCAGATAGGGAGGCATGGAAGAGACTCTGCACCAGTTTTCTCAAGGGTCGATCAATGTTGTGACACAAATGGAATGGAATGGAATGGAGACAGAGAAGTTTTGTAGAGGGAAAAAAAATGGGTCATGTTAATTATTATGAAGTAGTGATCATATGGAAAAGGGTTTATAGAAAGTTCATTAATAGGGGAATTAAGTCTACGTCTCCACTAAGCTTGCACATGGATTCAGGNAAGTTAGCTAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00877	17020	20105	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000877s00023930.1	PF00117.23	GATase	61	200	5.30E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.302
SRR1783600	control	0.369
SRR1783602	moderate drought stress	1.833
SRR1811619	moderate drought stress	1.821

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.150
DRR006520	Root Summer glycyrrhizin high producing strain	7.041
DRR006521	Root Winter glycyrrhizin high producing strain	1.343
DRR006522	Root Winter glycyrrhizin high producing strain	0.848
DRR006523	Root Summer glycyrrhizin low producing strain	0.819
DRR006524	Root Summer glycyrrhizin low producing strain	0.886
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.702
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.346

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.816
SRR2868004	Drought Stress (root)	1.857
SRR2967015	Control (root)	1.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.881
SRR9715740	Leaf	9.310
SRR9715741	Leaf	13.423
SRR9715739	Root	0.773
SRR9715742	Root	12.583
SRR9715743	Root	13.082

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.366
SRR8749028	MeJA induced 9h	4.608
SRR8749029	MeJA induced 9h	17.552
SRR8749030	Uninduced	14.236
SRR8749031	Uninduced	71.020
SRR8749032	Uninduced	72.354

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.615
SRR8400027	Control - Root	0.610