Gene detail information of Glyur000877s00023928 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09570.1 | 1.00E-25 | Cox19-like CHCH family protein |
| NR | EPS59096.1 | 8.90E-63 | hypothetical protein M569_15712 [Genlisea aurea] |
| trEMBL | tr|S8C3U7|S8C3U7_9LAMI | 3.00E-63 | Uncharacterized protein {ECO:0000313|EMBL:EPS59096.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00877 | 9037 | 11775 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000877s00023928.1 | PF06747.8 | CHCH | 103 | 137 | 2.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 58.656 |
| SRR1783600 | control | 54.866 |
| SRR1783602 | moderate drought stress | 55.908 |
| SRR1811619 | moderate drought stress | 56.858 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 76.021 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 76.475 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 57.796 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 56.090 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.825 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 55.624 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 140.478 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 138.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 333.210 |
| SRR2868004 | Drought Stress (root) | 232.664 |
| SRR2967015 | Control (root) | 201.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 312.813 |
| SRR9715740 | Leaf | 311.328 |
| SRR9715741 | Leaf | 337.912 |
| SRR9715739 | Root | 149.992 |
| SRR9715742 | Root | 151.119 |
| SRR9715743 | Root | 155.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 310.011 |
| SRR8749028 | MeJA induced 9h | 153.586 |
| SRR8749029 | MeJA induced 9h | 275.107 |
| SRR8749030 | Uninduced | 89.421 |
| SRR8749031 | Uninduced | 112.033 |
| SRR8749032 | Uninduced | 170.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 219.697 |
| SRR8400027 | Control - Root | 181.957 |