Gene detail

Gene detail information of Glyur000876s00020508

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26750.1	4.00E-53	hydroxyproline-rich glycoprotein family protein
NR	XP_003545111.1	0	PREDICTED: vacuolar protein sorting-associated protein VTA1 homolog [Glycine max]
Swissprot	tr\|Q9SZ15\|LIP5_ARATH	2.00E-96	Protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5 {ECO:0000303\|PubMed:17468262}
trEMBL	tr\|I1M6L7\|I1M6L7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G02170.1}

Sequence

Transcript Sequence

>Glyur000876s00020508.1
ACGAAACGGAGCCCGCGAAGCTGCTCTTACCGTACCTTCAACGCGCCGATGAGCTGCAAAAGCACGAACCTCTCGTCGCTTATTACTGTCGGTTATATGCAATGGAGAGGGGGCTGAAGATTCCGCAGAGTGAGCGCACTAAGACTACTAATGCTCTGCTTGTTTCCCTCATGAAGCAGCTTGAAAAGGTCGATAAGAAGGCAATCAAGTTGGGGCCTGAAGATAGTTTATATATTGAGGGATTTGCCTTAAATGTGTTTGGGAAGGCAGACAAACAAGATCATGCTGGAAGAGCAGATTTGAATACGGCAAAAACATTTTATGCTGCTAGCATTTTTTTTGAGATTCTTAATCAATTTGGGACACTTCAGCCTGATCTGGAGCAAAAACAGATATATGCAGCCTGGAAAGCAGCAGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCCACACCTGGCCCACCTGCTGGTGATAAGGATATGTCAATTCCGTCAAGTACTCCTAGTAATACATATGACCTTGGCACTACAGGAACTACAGTTACCAGTCCTGGACCAGAATCTGATCCATCACATGATTATCATGACCCTGTNAAGTACCAGCATTTGCCAAGCATTCATCCTGCTCCTGAATTCCATGATACTATCTATGACCAGGATTCTACAAATATTCCACCATCCATGCAGTTTCATGATGGAGTTAGTAATGGTCAGAATTTTTCTAATAGTTCTCCATCATCTCCTACTTATCCATCTACAGGTTATCCTTCCCAAGATTATCATCATCCTCCACCATCCCAAGATTACCATCCTCCTCTTCCTTCCCAAGATTACCATCATCCTCCACCATCCCAAGATTACCATCCTCCTCCGCCTTCCCAAGATTACCATTCACCACCACCTGCCAGATCAGAAGGTCCTATTCATCATCAGTATTCAGCGGAGCATTCACAGCCTTTAGCTCCTAATGACCCTTCTCATGAAACTTCCTCTTCTTACTCTTATCCACATTTTCAGTCTTATCCAAGTTTTGCAGAAAGCAGCCTACCATCAGTCCCATCAAACTATACGTATCATCAAGGGTCTGATGCTGCTTCTTATTCTACCCAGTCAGCTCCTCTAACTATAAACCATTCCTCAAGTACCCAGCAAAATTCCCTTGGCAGAAATGGAATTGTCTCAGAACCTAATTCAACTACTCAGACATACCAATATGACAGTAACTNCCAGCCACCACCTGAAAAAATAGCAGAGGCACACAAGGCTGCAAGATTTGCTGTTGGGGCACTTGCATTCGATGATGTGTCAACTGCAGTTGACTACTTGAGGAAATCACTTGAGTTGCTGACTAATCCATCATCTGGTAAATGAGATTGATCTNAAAGTTTTTTCTTTTGGGGGGGGGGGTATACCTTTTATTTCAGTGCATTCTTTTGTAAATATTATTCAAGTGTGAAGGAAATTCAGTGAACACGACTTGAATAGAATTTTGATATTTGCATCGAAGAGTATGCTAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00876	104532	108768	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000876s00020508.1	PF04652.11	DUF605	1	316	1.10E-51
Glyur000876s00020508.1	PF04652.11	DUF605	331	417	1.10E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.432
SRR1783600	control	10.282
SRR1783602	moderate drought stress	15.640
SRR1811619	moderate drought stress	15.420

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.799
DRR006520	Root Summer glycyrrhizin high producing strain	6.162
DRR006521	Root Winter glycyrrhizin high producing strain	8.629
DRR006522	Root Winter glycyrrhizin high producing strain	7.942
DRR006523	Root Summer glycyrrhizin low producing strain	8.459
DRR006524	Root Summer glycyrrhizin low producing strain	7.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.077
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.219

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.046
SRR2868004	Drought Stress (root)	8.236
SRR2967015	Control (root)	9.849

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.147
SRR9715740	Leaf	6.385
SRR9715741	Leaf	7.405
SRR9715739	Root	2.598
SRR9715742	Root	7.213
SRR9715743	Root	6.143

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.514
SRR8749028	MeJA induced 9h	35.116
SRR8749029	MeJA induced 9h	28.162
SRR8749030	Uninduced	43.609
SRR8749031	Uninduced	62.547
SRR8749032	Uninduced	33.733

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.061
SRR8400027	Control - Root	7.504