Gene detail

Gene detail information of Glyur000876s00020507

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55250.1	2.00E-174	IAA carboxylmethyltransferase 1
NR	XP_004500113.1	0	PREDICTED: indole-3-acetate O-methyltransferase 1-like [Cicer arietinum]
COG	NP_924885.1	9.00E-22	cyclopropane-fatty-acyl-phospholipid synthase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9FLN8\|IAMT1_ARATH	0	Indole-3-acetate O-methyltransferase 1
trEMBL	tr\|I1N0J0\|I1N0J0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G10080.1}

Sequence

Transcript Sequence

>Glyur000876s00020507.1
ATGGGAGACAATGTTGTAGTTTCCGATATGGAGTTAGAGAGGTTGCTTAGCATGAAAGGAGGTAAAGGAGAGGCTAGCTATGCCAACAATTCCCAAGCACAGGCCATACATGCCAAATCCATGCTTCACCTTCTAAAAGAGGCACTAGATGGAGTTGAGCTTCATGCCCCTGACATACCATTTGTGGTGGTGGATTTGGGGTGTTCATGTGGAAGCAACACCATCAACGTGATGGATGTGATCATAAAGCACATCATNAAGCGCTATGAGGCTTTAGGATTCAACCCACCAGAGTTCTCTGCTTTCTTCTCTGACCTTCCAAGCAATGACTTCAACACCCTCTTCCAGCTCCTTCCTCCATTAGCCAACTATGGAGTTAGCATGGAAGAGTGCCTTGCCGCCAACAACCACCGCTCCTACTTCGCCGCCGGAGTCCCCGGCTCTTTCTACCGGAGGCTTTTTCCGGCGAGGTCCATTGACATTTTCCACTCAGCCTTTTCTTTGCATTGGTTGTCTCAGGTTCCAGAATCTGTTCTGGACAAGAGGTCAATTGCATACAACAAGGGAAGGGTGTTTATCCATGGTGCTAGTGAGATCACAACAAATGCTTACAAGAAACAATTCCAACAAGACTTGGCAGGCTTCCTGAGCTCAAGGTCAGTGGAGATGAAAAGAGGGGGGTCCATGTTCCTTGTTTGCCTAGGCAGAACTTCAGTGGACCCCACAGACCAAGGTGGGGCTGGCCTCCTCTTTGGGACCCACTTTCAGGATGCTTGGGATGATCTTGTCCAAGAGGGATTAATTAGCAATGAGAAACGAGACAGTTTCAACATTCCAGTGTATGCACCAAGCCTGCAAGACTTCAAGGAGGTGGTTGAAGCTGATGGTTCATTTTCCATAAACAAGCTTGAGGTTTTCAAAGGAGGAAGCCCTCTTGTGGTGAACCAACCGGATGATGCGAGTGAAGTAGGCAAAGCTCTAGCCAACAGCTGTAGGAGTGTGTCTGGTGTCCTTGTTGATGCTCATATTGGTGACAAGCTTAGTGAGGAACTGTTTCTGAGGGTGGAGCGCCGAGCCACAAGCCATGGCAAAGAGTTATTAGAGCAACTACAGTTCTTTCACATAGTTGCATCCCTTTCTTTAGCTCAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00876	96659	100265	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000876s00020507.1	PF03492.10	Methyltransf_7	60	380	4.80E-105

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.437
SRR1783600	control	4.704
SRR1783602	moderate drought stress	5.233
SRR1811619	moderate drought stress	5.140

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.090
DRR006520	Root Summer glycyrrhizin high producing strain	0.210
DRR006521	Root Winter glycyrrhizin high producing strain	0.339
DRR006522	Root Winter glycyrrhizin high producing strain	0.245
DRR006523	Root Summer glycyrrhizin low producing strain	0.950
DRR006524	Root Summer glycyrrhizin low producing strain	0.943
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.715

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.933
SRR2868004	Drought Stress (root)	65.585
SRR2967015	Control (root)	37.023

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.281
SRR9715740	Leaf	0.061
SRR9715741	Leaf	0.140
SRR9715739	Root	13.830
SRR9715742	Root	5.419
SRR9715743	Root	7.796

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.041
SRR8749028	MeJA induced 9h	0.814
SRR8749029	MeJA induced 9h	2.580
SRR8749030	Uninduced	0.484
SRR8749031	Uninduced	1.238
SRR8749032	Uninduced	1.253

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.152
SRR8400027	Control - Root	15.882