Gene detail information of Glyur000876s00020505 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04970.1 | 5.00E-135 | lipid-binding serum glycoprotein family protein |
| NR | XP_003553049.1 | 0 | PREDICTED: putative BPI/LBP family protein At1g04970-like [Glycine max] |
| Swissprot | tr|Q9MAU5|Y1049_ARATH | 3.00E-164 | Putative BPI/LBP family protein At1g04970 (Precursor) |
| trEMBL | tr|I1N0I9|I1N0I9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G10070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00876 | 86014 | 90666 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000876s00020505.1 | PF01273.20 | LBP_BPI_CETP | 33 | 205 | 1.20E-21 |
| Glyur000876s00020505.1 | PF02886.12 | LBP_BPI_CETP_C | 276 | 459 | 3.40E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.231 |
| SRR1783600 | control | 5.308 |
| SRR1783602 | moderate drought stress | 5.924 |
| SRR1811619 | moderate drought stress | 5.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.018 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.813 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.231 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.900 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.779 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.720 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.249 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.464 |
| SRR2868004 | Drought Stress (root) | 25.362 |
| SRR2967015 | Control (root) | 21.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.702 |
| SRR9715740 | Leaf | 26.426 |
| SRR9715741 | Leaf | 21.602 |
| SRR9715739 | Root | 1.543 |
| SRR9715742 | Root | 5.246 |
| SRR9715743 | Root | 4.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.745 |
| SRR8749028 | MeJA induced 9h | 5.682 |
| SRR8749029 | MeJA induced 9h | 2.632 |
| SRR8749030 | Uninduced | 2.968 |
| SRR8749031 | Uninduced | 1.463 |
| SRR8749032 | Uninduced | 1.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.893 |
| SRR8400027 | Control - Root | 22.205 |