Gene detail information of Glyur000876s00020494.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22360.1 | 7.00E-74 | SWIB complex BAF60b domain-containing protein |
| NR | XP_004500124.1 | 0 | PREDICTED: uncharacterized protein LOC101504815 [Cicer arietinum] |
| COG | YP_002496615.1 | 1.00E-19 | SWIB/MDM2 domain-containing protein [Methylobacterium nodulans ORS 2060] |
| trEMBL | tr|I1KYE8|I1KYE8_SOYBN | 3.00E-172 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00876 | 29998 | 34456 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000876s00020494.1 | PF08766.6 | DEK_C | 3 | 60 | 1.10E-08 |
| Glyur000876s00020494.1 | PF02201.13 | SWIB | 164 | 238 | 8.40E-28 |
| Glyur000876s00020494.1 | PF02201.13 | SWIB | 269 | 340 | 1.60E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.999 |
| SRR1783600 | control | 20.273 |
| SRR1783602 | moderate drought stress | 34.277 |
| SRR1811619 | moderate drought stress | 33.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.707 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.532 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.294 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.755 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.198 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.676 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.373 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 41.925 |
| SRR2868004 | Drought Stress (root) | 49.986 |
| SRR2967015 | Control (root) | 53.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.499 |
| SRR9715740 | Leaf | 26.529 |
| SRR9715741 | Leaf | 28.720 |
| SRR9715739 | Root | 7.787 |
| SRR9715742 | Root | 17.394 |
| SRR9715743 | Root | 14.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 53.469 |
| SRR8749028 | MeJA induced 9h | 63.044 |
| SRR8749029 | MeJA induced 9h | 39.858 |
| SRR8749030 | Uninduced | 50.152 |
| SRR8749031 | Uninduced | 48.242 |
| SRR8749032 | Uninduced | 34.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.940 |
| SRR8400027 | Control - Root | 33.339 |