Gene detail

Gene detail information of Glyur000876s00020485

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26690.1	0	PLC-like phosphodiesterase family protein
NR	XP_004500131.1	0	PREDICTED: probable glycerophosphoryl diester phosphodiesterase 2-like [Cicer arietinum]
COG	YP_007097062.1	5.00E-25	glycerophosphoryl diester phosphodiesterase [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q9SZ11\|GPDL3_ARATH	0	Glycerophosphodiester phosphodiesterase GDPDL3 {ECO:0000305} (Precursor)
trEMBL	tr\|G7J1F5\|G7J1F5_MEDTR	0	Glycerophosphoryl diester phosphodiesterase family protein {ECO:0000313\|EMBL:AES70468.2}

Sequence

Transcript Sequence

>Glyur000876s00020485.1
AATTAATGTTGTANGGTTGACACTTGACATGTCTTCTCGAAGTTGACTTGACTTGATAAATGGCCAAGGTTGTGATAAGGGAAGCTTATTTTATAGCTAAGTTCTATTAAAATCCCAGATAAGGATTCAGAAATCTATGTGGANGTTCATGGCTCTCACTCGTGTACTTGCTCTGCTTATTCTTCAGTGCTCATTATTGGTAGCATTGGTGTCTGGCTGGAAAACACTGCAAGGGTCTCCACCACTGGTNATAGCACGTGGTGGGTTTTCAGGGATATTTCCAGATTCAAGTTTACCTTCCTATAGTTTGGCACTGAACACCAGTGGCCCAAATGTGACTCTATGGTGTGATGTGCAATTGACAAAGGATGGAGTTGGGGTTTGCTTTCCAGAGCTCAAGCTGGACAATGCCACTGACATTTCCATTGTTTACCCAGACAGAGTTAAGGATTACTCAGTTAATGGGGTTCCAACCCGGGGTTGGTTCTCTGTAGACTACAACTTCAATGAACTGGCTAATATCTCCCTTGTTCAGGGAGTGTATTCTCGAACTAACAAGTTTGATGGCGGTAACTATCGCATTCTCACTGTTGAAGATGTATCTAAATTAGTAAAATCACCATCAACAGGCCTGTGGTTAAATGTCCAGCATGGTAAATTCTTCAAGCAGCAGANTTTGAGTGTAGAAAACTTTCTACTATCTCTTTCTACTAAAAGAGTACCTATCAGTTACATCTCATCACCTGAAGTGGATTTCCTAAGAAGATTGAGATCAAACTCCACTCATAGAAAAACCAACCTGGTCTTCAGGTTTCTAGAGCAGTATAAGAATGAGCCTTCAACCAATCAGACTTATGGTGCNCTCTTGAAAAATATCACATTTATCAGGACATTTGCTTCTGGAATTCTTGTCCCCAAAGGCTATATATGGCCTTTAGGCTCAGACCTTTATCTACAGCCACACACCTCTCTTGTCTCAGATGCTCATAAAGAAGGGCTGCAAGTTTTTGTATCAGACCTTGTCAATGATGTTCCATTTAGCTACAATTTCAGTTATGATCCTATGGCTGAGTGCCTGTCTTTCATTGATAGTGGTACCTTCTCTGTTGATGATTGCTTTTCTGGTCTAGGGAAAAATGCCACAAACCAAGTGGAAACTTTGGTCATCACAAAATATGGAGCAAGTGGAGACTATCCTGCTTGCACTGACCTTGCATATAAGAAAGCTAAATCAGATGGAGCAGATGTACTTGACTGCCCTGTTCAAATGTCGAAGGATGGAATACCCTTTTGCTTAAGCTCTATAGATCTTCTAGAGAGCACAACAGTTGCTGATACAAAATTCAAAAACCGTGCAACTATTGTTCCAGAGATTAAAAATGGAAGTGGCATCTATGCATTTAGCTTGACATGGAATGAGATAAAAACATTGACTCCCTCAATATTGAACCCTTATGAGAAATACAGATTGTTCCGGAATCCAAAATTCAAAAATCAAGGGGAATTTTTAACCTTGTCCCAGTTTTTGTACTTGACTAAAGGCTCTGGCATCTTGATCAGCATAGAGAATGCTGCTTACCTTGCAAAGAAGAGGGAATTAAGTGTGACCAATGCAGTTCTTGATGCTTTACAAAAAGCAGGTTATGATAAACCAAGATCCCGGAAAGTTATGATTCAGTCAACTCACAGCTCTGTGCTGAAGATATTCAAGGATAAATCCAAATATGAAAGGGTTTACAAAGTTGATCACGATATTCGCGATGTTGCTGTCTCGGCTATTAAGGACATCAAAACATTTGCTGATTCTGTGGTGGTACGAAAGGAATCTGTTTTTCCTGAATCCTCAGCCTTTCTAGTTAACTCAACAAACACTGTGGCAAGGCTGCATTCATTTAACCTCCCAGTTTATGTAGAAACTTTCAGCAATGAATTTGTATCTCAAGCGTGGGACTACTACTCTGATGCAACTGTTGAGATAAATTCATTTGTCCTTGTTGCCAAGGTTAACGGCATTATCACTGACTTCCCTAAGACTGCTGCTAGATACAGGAAGAACAGATGTTTAGAGCACGGCCACAAAGCACCTTATATAAGTCCTGTTGAACCTGGCAAACTTGTAGAACAAATTAATGATTTGTACCTTCCACCACCTGCCCCTCAACTCCCAGTCTTAAATGATAACAATGTGACAGAGCCACCTTTGCCAGGTGTTTCTGGACATGTTCCAATTCCCAGTTNTGCTCCTGGAATAGCAGCAGCAGCTCCAGCTCTCATCACAGCATAGAGAAAGCAAACAGAAAACAAAGTGCTGTAGCATCCATACATGCCATTACCNTGAGAGCTTCATAGGATTTCTTTCTATGAGAAGTATTTTAACAAATTCAACACTACATTTATTATGAGTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00876	2642	8444	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006071 glycerol metabolic process

GO:0006629 lipid metabolic process

molecular_function

GO:0008081 phosphoric diester hydrolase activity

GO:0008889 glycerophosphodiester phosphodiesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000876s00020485.1	PF03009.12	GDPD	43	292	4.50E-09
Glyur000876s00020485.1	PF03009.12	GDPD	348	633	4.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.946
SRR1783600	control	1.961
SRR1783602	moderate drought stress	0.347
SRR1811619	moderate drought stress	0.325

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.045
DRR006520	Root Summer glycyrrhizin high producing strain	0.044
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.229
DRR006524	Root Summer glycyrrhizin low producing strain	0.209
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.900
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.919
SRR2868004	Drought Stress (root)	9.402
SRR2967015	Control (root)	4.628

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	94.401
SRR9715740	Leaf	76.083
SRR9715741	Leaf	73.386
SRR9715739	Root	0.258
SRR9715742	Root	0.200
SRR9715743	Root	0.537

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.788
SRR8749028	MeJA induced 9h	4.622
SRR8749029	MeJA induced 9h	6.278
SRR8749030	Uninduced	2.239
SRR8749031	Uninduced	0.398
SRR8749032	Uninduced	0.360

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.977
SRR8400027	Control - Root	3.946