Gene detail information of Glyur000875s00029463 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67040.1 | 4.00E-43 | |
| NR | XP_003551843.1 | 0 | PREDICTED: uncharacterized protein LOC100813026 isoform X1 [Glycine max] |
| trEMBL | tr|I1N5B1|I1N5B1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G53330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00875 | 18250 | 22918 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000875s00029463.1 | PF14383.1 | VARLMGL | 94 | 120 | 9.50E-12 |
| Glyur000875s00029463.1 | PF14309.1 | DUF4378 | 772 | 932 | 1.70E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.097 |
| SRR1783600 | control | 3.270 |
| SRR1783602 | moderate drought stress | 2.083 |
| SRR1811619 | moderate drought stress | 2.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.290 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.881 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.724 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.636 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.165 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.053 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.253 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.335 |
| SRR2868004 | Drought Stress (root) | 4.991 |
| SRR2967015 | Control (root) | 7.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.076 |
| SRR9715740 | Leaf | 0.164 |
| SRR9715741 | Leaf | 0.568 |
| SRR9715739 | Root | 0.458 |
| SRR9715742 | Root | 2.805 |
| SRR9715743 | Root | 2.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.623 |
| SRR8749028 | MeJA induced 9h | 5.590 |
| SRR8749029 | MeJA induced 9h | 3.001 |
| SRR8749030 | Uninduced | 1.592 |
| SRR8749031 | Uninduced | 0.174 |
| SRR8749032 | Uninduced | 0.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.963 |
| SRR8400027 | Control - Root | 11.509 |