Gene detail

Gene detail information of Glyur000875s00029461.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38260.1	2.00E-56	Protein kinase superfamily protein
NR	XP_003624367.1	0	Ser/Thr protein kinase [Medicago truncatula]
COG	YP_001958461.1	9.00E-08	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	3.00E-59	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|G7KUD5\|G7KUD5_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES80585.2}

Sequence

Transcript Sequence

>Glyur000875s00029461.1
ATGAAACCTCTGCTTCATTATCCACCTTCTTCTTCCGTTGTATTCTTTCTCTCCGTCGCACTTTTCGTGATCTCAACCAACAATATTCCAACATGTATGTGTCAGGACGATGATGACCAATACAGTAACTGCAAAAACGCTTTCGCCTGCGGAAGCAGCGCCGTCTCAAACATGCTTAACTACCCATTCTGGGGAGAAAACAGAGAACAGTATTGCGGTGATGATGCACCTGAGTTGGAGCTCAAATGCGAAGACGGTGTTCCCAAAATAACCATCAATCTCATCAAATACCGAATTCTGGATTGGNNNAANACAACGCAGCAACTCACAGTCGCAAGGGATGATTACTGGGATGGTATATGTGCTGTGACTGATGATTACAAGAACGGCTCATTCGATAACACTCCGTTTCAACGGGATGCTTTTGATTTTGATAACGTGACGCTGTTATACAATTGCGCTTCAACTCCAAATACACCGAATGTGTTCCACTGCGATNATGGTAGACATGATGTCTACTACGTTCTCGAACCTTCTTCTTCGTTCCCTTGTGCGAGTGTTGTGATTCCAATTTTGGGAACACAGGCTTCAGCACTTGCATCTGGCAACGGTAATATAAACGATACATTGAAAGAGGGTTTTGAGTTGAGTTGGAGCGGAGATTNTACAGAGTGCCACACGTGCGTTGATTCTGGTGGCGCATGTGGTAATGATGGTGNTTCCGGATTCAGGTGTTTCTGCAAGGATGGACCTCACACCACTTCATGCAATTCACAAAGAGCCCCAACCTCGAACTCAAGTGCATCAGTTGCTGCATTTGGAGTAACAATATTCTTTATTGTGATTAGTTGTTACCTTAAGAGGGGTATAGGGGGACAAAAGAGTATTTTCAAGAAAAGAAGTAAATTTGTTGACCACAATGTGGAAGCATTCATGCGAAGTTACAATTTGTCGATGCCAAAGAGATATAATTATGCGGAAGTGAAAAGGATCACAAACTCATTCCGAGATAAGTTAGGTCAAGGAGGATATGGTGTTGTGTACAAAGCAAGCTTACCAGATGGTCGTCATGTGGCAGTGAAAGTAATCAGTGAGTCCGAGGGAAATGGTGAAGAATTCATAAATGAAGTTGCTAGCATTAGCAAAACGTCACATGTGAACATTGTCTCACTTTTGGGTTTTTGTTATGAGATGAACAAAAGAGCACTAATGTATGAATNCATGCCTAATGGATCATTGGATAAGTTCATCTATAAAAGTGGGTTTCCAACTGCTATTTGTAATTTGGATTGGAACACATTGTTCCAAATTGCAATTGGCATTGCTCGAGAAGAAAAGCTCTTAAATCCATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00875	9044	13821	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000875s00029461.1	PF14380.1	WAK_assoc	172	251	1.50E-17
Glyur000875s00029461.1	PF07714.12	Pkinase_Tyr	335	442	2.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.193
SRR1783600	control	0.247
SRR1783602	moderate drought stress	0.110
SRR1811619	moderate drought stress	0.089

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.027
DRR006520	Root Summer glycyrrhizin high producing strain	1.975
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	5.375
DRR006524	Root Summer glycyrrhizin low producing strain	5.553
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.926
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.749

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.266
SRR2868004	Drought Stress (root)	11.947
SRR2967015	Control (root)	7.870

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.037
SRR9715740	Leaf	6.376
SRR9715741	Leaf	11.631
SRR9715739	Root	4.156
SRR9715742	Root	8.049
SRR9715743	Root	6.964

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.247
SRR8749028	MeJA induced 9h	12.989
SRR8749029	MeJA induced 9h	9.791
SRR8749030	Uninduced	15.301
SRR8749031	Uninduced	17.722
SRR8749032	Uninduced	8.753

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.484
SRR8400027	Control - Root	6.940