Gene detail

Gene detail information of Glyur000875s00029460

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16140.2	1.00E-72	Peptidyl-tRNA hydrolase family protein
NR	AFK38602.1	1.81E-128	unknown [Lotus japonicus]
COG	YP_001090023.1	5.00E-44	peptidyl-tRNA hydrolase [Clostridium difficile 630]
Swissprot	tr\|Q9LF14\|CRS2B_ARATH	5.00E-95	Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic (Precursor)
trEMBL	tr\|I3SEB0\|I3SEB0_LOTJA	7.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:AFK38602.1}

Sequence

Transcript Sequence

>Glyur000875s00029460.1
TGTCAATCCATAAATATATAACCAGTACTGTTTCAGTGTTTCATTCTAACCCATCATCTGAAACAACACACGCTCTCCTTGTTCTTGCTCTTCCCTCCGTGCGCACACGACGCCGCATCCTCAAGCAACTCTCCACCGTTGAACCATCGCACAAAAGCAACTTAGCAGGTTAAATTCTTGTGTTATGGTACAACACCTTCGAAGGTGTGGTACCCTAGCCTTCAGCCTAATAAAAATAAGCACTAAACCAAACAAAGCAAAAAATCTGCTATTCCCAACACCTTCTCCACTCGCGTGCTTGTAAGCTGCTCAAACCATTTCGTGTCTTTCTTCGTATTTTTTGTTTGATGCTGTATCAATGTTGCATGTTGNATCTGCCCCAAGCTTTTGTTTAACCTATCCCAGGAACCTTCACTGTCCTCGATATTTAACAAAGCCTTNGGCTAAAACAAGATTTTCTGTCCGTTGTTCAGTTGCAGAGACAAATAATGGAGCTAAAGTGGAATATACTCCTTGGCTTATTGTTGGCTTGGGTAACCCTGGAAATAAATACCATGGCACTAGGCACAATGTAGTTGGATTTGAAATAATTGATAGCCTTTCTCGAACCGAAGGCATTCTGATGAACACAATACAGTCAAANGCCTTGATTGGAATAGGTTCTATAGGAGAAGTACCAGTTCTGCTGGCAAAGCCCCAAACATACATGAATTTTAGTGGAGAATCGGTTGGGCCACTTGCTGCATATTATCGAGTACCCTTGCGCCATATACTACTAGTTTATGATGAAACAAGCCTTCCAAACGGCATTCTAAGGCTTCAACCTAAAGGAGGACATGGGCATCACAATGGGTTGAAAAACGTGATGGGCCATTTGGATGGTTCCCGTGATTTTCCTCGACTTGCGATCGGAATTGGAAATCCTCCTGGAGCTATGGATTTAAGAGCTTTTCTTCTACAAAAGTTCAGTTCAGAGGAAAGAAAGCNN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00875	4779	9099	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0004045 aminoacyl-tRNA hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000875s00029460.1	PF01195.14	Pept_tRNA_hydro	54	209	2.40E-47
Glyur000875s00029460.2	PF01195.14	Pept_tRNA_hydro	16	152	6.80E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.570
SRR1783600	control	4.841
SRR1783602	moderate drought stress	3.242
SRR1811619	moderate drought stress	3.452

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.590
DRR006520	Root Summer glycyrrhizin high producing strain	5.339
DRR006521	Root Winter glycyrrhizin high producing strain	11.682
DRR006522	Root Winter glycyrrhizin high producing strain	12.867
DRR006523	Root Summer glycyrrhizin low producing strain	11.186
DRR006524	Root Summer glycyrrhizin low producing strain	9.977
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.149
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.682

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.317
SRR2868004	Drought Stress (root)	3.686
SRR2967015	Control (root)	4.032

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.957
SRR9715740	Leaf	20.697
SRR9715741	Leaf	10.122
SRR9715739	Root	1.049
SRR9715742	Root	3.958
SRR9715743	Root	2.003

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.446
SRR8749028	MeJA induced 9h	7.770
SRR8749029	MeJA induced 9h	6.663
SRR8749030	Uninduced	5.285
SRR8749031	Uninduced	2.324
SRR8749032	Uninduced	2.585

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.851
SRR8400027	Control - Root	8.150