Gene detail information of Glyur000872s00034605


Functional Annotation

DatabaseOrthologsE valueAnnotation
NRKEH29234.14.74E-39extensin-like repeat protein [Medicago truncatula]
COGYP_007067976.13.00E-13hypothetical protein Cal7507_4787 [Calothrix sp. PCC 7507]
Swissprottr|P13993|PRP2_SOYBN1.00E-35Repetitive proline-rich cell wall protein 2 (Precursor)
trEMBLtr|A0A072UHK0|A0A072UHK0_MEDTR2.00E-39Extensin-like repeat protein {ECO:0000313|EMBL:KEH29234.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold008724032140850+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

molecular_function

GO:0005199  structural constituent of cell wall



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000872s00034605.1PF02095.10Extensin_127367.8
Glyur000872s00034605.1PF02095.10Extensin_137460.02
Glyur000872s00034605.1PF02095.10Extensin_1475311
Glyur000872s00034605.1PF02095.10Extensin_154630.014
Glyur000872s00034605.1PF02095.10Extensin_164730.014
Glyur000872s00034605.1PF02095.10Extensin_177860.022
Glyur000872s00034605.1PF02095.10Extensin_187940.1
Glyur000872s00034605.1PF02095.10Extensin_1921010.019
Glyur000872s00034605.1PF02095.10Extensin_11021110.0017


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control284.132
SRR1783600control318.520
SRR1783602moderate drought stress199.499
SRR1811619moderate drought stress199.532

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain40.652
DRR006520Root Summer glycyrrhizin high producing strain40.523
DRR006521Root Winter glycyrrhizin high producing strain926.812
DRR006522Root Winter glycyrrhizin high producing strain927.520
DRR006523Root Summer glycyrrhizin low producing strain44.298
DRR006524Root Summer glycyrrhizin low producing strain47.649
DRR006525Leaf Summer glycyrrhizin high producing strain44.615
DRR006526Leaf Summer glycyrrhizin high producing strain47.980

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)173.134
SRR2868004Drought Stress (root)100.707
SRR2967015Control (root)149.281

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf239.568
SRR9715740Leaf172.981
SRR9715741Leaf124.597
SRR9715739Root729.617
SRR9715742Root388.842
SRR9715743Root494.093

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h988.784
SRR8749028MeJA induced 9h1122.956
SRR8749029MeJA induced 9h910.693
SRR8749030Uninduced401.357
SRR8749031Uninduced271.525
SRR8749032Uninduced971.785

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root151.193
SRR8400027Control - Root78.262

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved