Gene detail information of Glyur000872s00034603


Functional Annotation

DatabaseOrthologsE valueAnnotation
NRKEH29234.19.47E-57extensin-like repeat protein [Medicago truncatula]
COGYP_007067976.14.00E-20hypothetical protein Cal7507_4787 [Calothrix sp. PCC 7507]
Swissprottr|P13993|PRP2_SOYBN5.00E-51Repetitive proline-rich cell wall protein 2 (Precursor)
trEMBLtr|A0A072UHK0|A0A072UHK0_MEDTR4.00E-57Extensin-like repeat protein {ECO:0000313|EMBL:KEH29234.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0087267707304+


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

molecular_function

GO:0005199  structural constituent of cell wall



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000872s00034603.1PF02095.10Extensin_1273610
Glyur000872s00034603.1PF02095.10Extensin_137460.027
Glyur000872s00034603.1PF02095.10Extensin_147560.019
Glyur000872s00034603.1PF02095.10Extensin_157660.038
Glyur000872s00034603.1PF02095.10Extensin_167760.019
Glyur000872s00034603.1PF02095.10Extensin_1788353
Glyur000872s00034603.1PF02095.10Extensin_187930.42
Glyur000872s00034603.1PF02095.10Extensin_1911000.02
Glyur000872s00034603.1PF02095.10Extensin_11011100.019
Glyur000872s00034603.1PF02095.10Extensin_11111200.029
Glyur000872s00034603.1PF02095.10Extensin_11211280.13
Glyur000872s00034603.1PF02095.10Extensin_11261350.026
Glyur000872s00034603.1PF02095.10Extensin_11361450.0023


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control338.412
SRR1783600control364.052
SRR1783602moderate drought stress223.828
SRR1811619moderate drought stress222.494

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.045
DRR006520Root Summer glycyrrhizin high producing strain49.118
DRR006521Root Winter glycyrrhizin high producing strain1076.845
DRR006522Root Winter glycyrrhizin high producing strain1077.955
DRR006523Root Summer glycyrrhizin low producing strain41.576
DRR006524Root Summer glycyrrhizin low producing strain41.929
DRR006525Leaf Summer glycyrrhizin high producing strain53.478
DRR006526Leaf Summer glycyrrhizin high producing strain60.410

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)289.715
SRR2868004Drought Stress (root)175.562
SRR2967015Control (root)236.712

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf401.992
SRR9715740Leaf262.444
SRR9715741Leaf201.371
SRR9715739Root1122.340
SRR9715742Root520.755
SRR9715743Root625.226

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1861.420
SRR8749028MeJA induced 9h1985.939
SRR8749029MeJA induced 9h1686.668
SRR8749030Uninduced624.778
SRR8749031Uninduced471.819
SRR8749032Uninduced935.007

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root211.815
SRR8400027Control - Root110.033

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved