Gene detail

Gene detail information of Glyur000870s00029783.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26640.2	7.00E-45	WRKY family transcription factor family protein
NR	XP_006586119.1	1.72E-125	PREDICTED: probable WRKY transcription factor 20 isoform X2 [Glycine max]
Swissprot	tr\|Q93WV0\|WRK20_ARATH	2.00E-49	Probable WRKY transcription factor 20
trEMBL	tr\|A7LHH5\|A7LHH5_SOYBN	4.00E-116	WRKY35 {ECO:0000313\|EMBL:ABS18434.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000870s00029783.1
CTCGGGACTTTTAAACATCATTTCAGATTCACAGTTCAACCAAAAAAAAAATCTATATCAGCACCATGAGAGACCTCAGAAAACGTTTAAAATGACAAGCAAATGACAGAACACAGAGACAGAACATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCAATGTTACAAGTCAACTGCGTCTCCCTCTCTGACACACACAACCTTCAAACACAGACACACACAAAATACGCACACTCCAGAGTCCCTTATTTGAAATGACCCTTTTGCCCCTCCCTTTCTGCCTCGTTCATCTTCCGTTTTGACTCAACCACTCTCACTTTCACTCTCACACGCACGCGCACTCTCTCTCTCTCTTACCACAATGGACGCCGGCGAAGCACACTCTGGGTCGGAGCTCNGGCGAAGGGGTCCAGGCGAGGCGGAATCGGAACATGAGGATCCGAATCGAACCGGTGGGTATCGACCCGATTCTGGCGCTGACGGAGCTGCGGCTTCCGGCACCACNGTCGGCGCTAGGTACAAGCTGATGTCGCCGGCGAAGCTCCCGATCTCTAGGTCGCCGGTTTTGACGATTCCGCCGGGGCTCAGTCCGACGGCGTTTCTGGAATCCCCGGTTCTGCTCTCAAACATGAAGGTGGAACCTTCACCAACAACAGGGTCCCTTCCTAGGCTTCAACAAACAGCACATGGTTCTGTGACTTCNGCTACATCTGCTGCATTTCCTGTAACCACTGTATGCTTCAATACCAATACTTTGGATGACGGAAAATCCAGCTTCTTTGAGTTCAAACCACACAGTAGATCAAATATGGTTCCTGCTGAATTAGACAACCGTGCATGTGAAAAATCTACTCAAATAGATGGTCAAGGAAAAGCTCAATCTTTTGCCTCATCACCATTAGTCAAAAGTGAAATTGCAGGCCCTTCAAATGAAATAAGTTTATCATCACCTGTTCAGATGGTTAGCTCAGGGGCTAGTGCTCATGTTGAAGTCGATTTGGACAAATTAAACTCTGGGGGNAACATAGCAACTGGGCTTCAAGCTTCTCACACAGCTGAGCCTGACGGCACTCCAGAGCTATCNCCTGTAGCAACAAATGATGATAGTCTAGAGGATGCAGGGTTTNTGTCAAACCGGAATAACGATGAGGTTGATGAAGATGATCCCTTCTCAAAGCGAAGGAGTTACTACAAATGCACGAATGCGGGTTGCCCTGTTAGAAAACACGTTGAGAGGGCATCACATGACCCGAAAGCTGTAATAACCACATATGAGGGTAAGCACAATCATGATGTACCNACTGCAAGGAATAGTAGCCATGACATGGCAGGACCAGCTGCTGCAGGTGGACAGACAAGGATTCGACAAGAAGAAAGTGATACTATTAGCCTTGACCTTGGTATGGGAATTAGCCCAGCTGCTGAAAATAGATCAAACAGTCAAGGGAGAATGATGCTTAATGAATTTGGGGACAGCCAAACTCACACCAGCAATTCCAATTTCAAGTTTGTTCATACTACCCCACCTNCAGTATACTTTGGTGTACTAAATAACAACTCAAATCCATATGGCTCTAGAGAAAATCCGAGTGATAGTCCATCTTTAAACCATTCTGCTTATCCTTGCCCGCAGAACACGGGAAGAATACTAATGGGTCCCTAAATTTGTTTACGAAAAAAAAGGGTAAAATAAAGTAAGATTCTGATTTCTGAGTACCATTTTGCTTTTTTCTTTTTGGCGGGTAAAGCTTCAAAGGCATAGCTTGTTTTCTGTTTGAAAATGCTGATAGTTCTTTTATGTTCATATGACTATCTGAGAGTTGCTCTTTGTTAGAAGAACTAGTAGTAGCTGTGTTCCTTCAGGTTGACTTTCAAGTCTAATTGCTGTTTGTATAATTATATACAAATTCTTCTGTACAAATATGAAGCTGATACCAAAGTTGCTTCCACAAGAACCCTTGTAAAAGTGTTTGAATTCAACTATTTATAAGAAGTAGCATTTAGCCTGTTCCTGAACTTTTTGTTGTAATTGCATTAAGATTACTGTATAATATAGCTGGTAGCTATACCTACCCGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00870	65196	70609	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000870s00029783.1	PF03106.10	WRKY	273	311	6.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.259
SRR1783600	control	11.152
SRR1783602	moderate drought stress	13.773
SRR1811619	moderate drought stress	13.416

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.994
DRR006520	Root Summer glycyrrhizin high producing strain	12.898
DRR006521	Root Winter glycyrrhizin high producing strain	8.228
DRR006522	Root Winter glycyrrhizin high producing strain	7.752
DRR006523	Root Summer glycyrrhizin low producing strain	14.102
DRR006524	Root Summer glycyrrhizin low producing strain	14.406
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.582
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.079

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.843
SRR2868004	Drought Stress (root)	16.226
SRR2967015	Control (root)	19.552

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.440
SRR9715740	Leaf	17.879
SRR9715741	Leaf	16.654
SRR9715739	Root	4.022
SRR9715742	Root	13.135
SRR9715743	Root	12.578

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.852
SRR8749028	MeJA induced 9h	14.809
SRR8749029	MeJA induced 9h	6.607
SRR8749030	Uninduced	3.053
SRR8749031	Uninduced	0.937
SRR8749032	Uninduced	0.713

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.362
SRR8400027	Control - Root	19.550