Gene detail information of Glyur000870s00029782 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50600.1 | 1.00E-176 | scarecrow-like 5 |
| NR | XP_004506678.1 | 0 | PREDICTED: scarecrow-like protein 5-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8H125|SCL5_ARATH | 0 | Scarecrow-like protein 5 |
| trEMBL | tr|I1N0D2|I1N0D2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G09030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00870 | 61168 | 62799 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000870s00029782.1 | PF03514.9 | GRAS | 174 | 543 | 4.30E-133 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.697 |
| SRR1783600 | control | 25.566 |
| SRR1783602 | moderate drought stress | 30.909 |
| SRR1811619 | moderate drought stress | 30.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 125.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 124.808 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 35.662 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 34.970 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 111.189 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 111.294 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.264 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 46.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.591 |
| SRR2868004 | Drought Stress (root) | 68.008 |
| SRR2967015 | Control (root) | 91.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 290.244 |
| SRR9715740 | Leaf | 470.213 |
| SRR9715741 | Leaf | 493.335 |
| SRR9715739 | Root | 174.090 |
| SRR9715742 | Root | 295.724 |
| SRR9715743 | Root | 274.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 280.662 |
| SRR8749028 | MeJA induced 9h | 486.974 |
| SRR8749029 | MeJA induced 9h | 259.027 |
| SRR8749030 | Uninduced | 340.782 |
| SRR8749031 | Uninduced | 108.802 |
| SRR8749032 | Uninduced | 126.909 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.801 |
| SRR8400027 | Control - Root | 81.347 |