Gene detail

Gene detail information of Glyur000870s00029781

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05160.1	2.00E-106	CCCH-type zinc fingerfamily protein with RNA-binding domain
NR	KHM99485.1	0	Zinc finger CCCH domain-containing protein 18 [Glycine soja]
Swissprot	tr\|Q9SJ41\|C3H18_ARATH	8.00E-126	Zinc finger CCCH domain-containing protein 18
trEMBL	tr\|K7LAA2\|K7LAA2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G43790.2}

Sequence

Transcript Sequence

>Glyur000870s00029781.1
ATGGATATTTCAGAGTACACAAGGATTGTTTTTGATAAACTTCAGAGNTTTGAGCCAGAGCATGCTACAAAGATCATTGGGTATCTCCTTCTGCAAGATCATGGTGAGCAAGAGATAGTTAAATTGGCTTCATGCCCAGATCATTTAATCAGTGAAGTGGCCCTTAAGGCCAAAACCAAGCTTCAAAGGTTGGCTGCTAAATCAGCCATAATTCCAATTTCACTCAACAACCCTCAACAAGATTTAAGCCACATGTCAGTAATCTCCCCCGGCACTCCTACTTTGCCGGCGAGCTTCCAAGTTGCCTCTCCCTATTACAGTCCGCAGTCTGCTAGCAATACTAATGCANAATTTATGGCAATAGGTTACTTGGATTCTATCCCAGAACAACACAAGCAGACCCCTTTGTTCAGTTTGGAGAATCATGTGGATGGTGTAAATTGTGGGACTCCTAAAATGGCCTCCAATGATTACTATGGCTTAGATACTTCGGCTCGCAATTTGAACGGAAAAGCTGGTAGAAGGTTTTCAAACATGTCTGAATTTCCAGTCAAGACCTGNCACTATTTCAACAAAGGATATTGTAGGCATGGAAATAGCTGTAGATACTATCATGGACAAGTTGTACCTGAGATGTTCTCTCAGATGTATGGAAATGACAACAATAATGACGATCGGGCGATCTCACCAGGGTCATTGGCACAGTTAGAGTCGGAGATTGTTGAGCTCCTGAAACAAAGAGGCAATCCTATTTCGATCGCTTCGCTTCCAATGGCATACTATGANAAGTATAAAAAGGTACTGCAGGCAGACGGTTACCTAACTGAGAGCCAAAGACATGGTAAGTCTGGCTACAGTTTGACAAGGCTTCTTTTCCAATTGAGAAATAGGATTCGGCTAATTGATAGGCCTCACGGGCAGCATGCGGTGGTTCTAGCAGAAGATGCTCCAAAATTCATGGGAAAGTCAGATTTTGGTCAAAATATTAGNGCATCACAACAAATATACCTGACATTTCCAGCTGACAGCACTTTCTCAGAGGAGGATGTCTCAAACTACTTCTGCACTTTTGGGTGTGTTGAAGATGTAAGGATCCCATGCCAGCAGAAAAGGATGTTTGGATTTGTGACATTTGNTGATCCTGAAACTGTTAAAATGATTTTGGATAGGGGAAATCCCCATTATGTTCGTGGATCTCGGGTTCTTGTGAAACCTTACAAGGAGAAGCCAAAACTTGTTGACAGGAAGTACCAAGATAGAATGGAGCATCCTGTTTGTTATTCGCCACGCTATGTAGAAATTGACACTGAAGTTACCTCAATTCCAAGAAGTTGTAGGAACCCTCGATTTTTGAGAAGGCTGTTCCTTGAAGAGCAAGAAAGGGCCCTTGAATTTGAGAGAAGGCGTCTTGTAGAGNTGCAGCTGGCCCAAAAGTCTTTGTCTATTTCACCTCATTTAAGCATCAGCATGGATGGATTAAAAGTTTCAGATGATCATTTCACTGNCCAGCCTGCTGAATCTTTCAGATACGCACCAAACNACAAAGTGGGGTATACAGATGCCAATTCCTCTGATGAGGACAGCAGTGAAGGACTAAATCTCCCAGACAGCCCGTTTGCATTTCCAGTAGATAGTGNAATTTCAGCAGTTATGTAGTTTCAGAAACACAAACAGGAGTAACATAGAGTTTACAAATAGCTCAGTTTCATACATAACACAGTNCATTACCGTTGATCTCTTTTTTCTCAACTAGCTCATCAGTTTAGTCAAAGTCTACAAGCTGAAGAAGGGTCTTTTTCACAACTGAATTAGTGGAATTAACAACAACTAAGTGACACATGTAAGAAGGTTATAGCTTTTAGTTACANGAAGAAGATGGCAAAAGGTTTGGTTTCTAGAAGATCATGTAGTAGTTAAAGTTAGGAGCTTTTTATAAGAATTCATCACTGGATGAAAAGAACTAGGTAATATTATTATCCCTTTCCACAGTTTTCTTTAGAGATTTAGGCTACTTTGGTAATTTATGGCTATGGACAGAAAGGGTTCAATTACTCATTGAGAAGAAGCATAATAATTACAATAATTTTTACTTAGGCCGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00870	47184	51608	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000870s00029781.1	PF12872.2	OST-HTH	232	311	2.90E-08
Glyur000870s00029781.1	PF14259.1	RRM_6	343	401	4.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.433
SRR1783600	control	0.412
SRR1783602	moderate drought stress	0.126
SRR1811619	moderate drought stress	0.126

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.211
DRR006520	Root Summer glycyrrhizin high producing strain	4.386
DRR006521	Root Winter glycyrrhizin high producing strain	7.280
DRR006522	Root Winter glycyrrhizin high producing strain	7.232
DRR006523	Root Summer glycyrrhizin low producing strain	0.324
DRR006524	Root Summer glycyrrhizin low producing strain	0.247
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.811
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.723

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.820
SRR2868004	Drought Stress (root)	0.245
SRR2967015	Control (root)	0.666

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.419
SRR9715740	Leaf	6.874
SRR9715741	Leaf	2.569
SRR9715739	Root	0.189
SRR9715742	Root	0.324
SRR9715743	Root	0.401

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.084
SRR8749028	MeJA induced 9h	0.133
SRR8749029	MeJA induced 9h	0.085
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.037
SRR8749032	Uninduced	0.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.950
SRR8400027	Control - Root	1.280