Gene detail

Gene detail information of Glyur000870s00029780

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07040.1	2.00E-112	NB-ARC domain-containing disease resistance protein
NR	KEH33986.1	0	LRR and NB-ARC domain disease resistance protein [Medicago truncatula]
COG	YP_007068304.1	1.00E-10	adenylate cyclase [Calothrix sp. PCC 7507]
Swissprot	tr\|Q39214\|RPM1_ARATH	3.00E-132	Disease resistance protein RPM1
trEMBL	tr\|A0A072UX30\|A0A072UX30_MEDTR	0	LRR and NB-ARC domain disease resistance protein {ECO:0000313\|EMBL:KEH33986.1}

Sequence

Transcript Sequence

>Glyur000870s00029780.1
ATGTGTGATAATGCACTGTCCCTAGCTCGTGACCATTTGCTTCCACTCGCTCGTGATCATTTGCTTCCACTGTTATTGGAAGCAGCAGATATGATAAGGGGCGTCCCAAGAGAAGTTGCAGACTTGAAAGCTGAACTAGAAAGCATTGAAGACTTCATCAACGATGCAGATAGAATGGCTGAAGCTGAAGAAGGCAACACACGTGATGGAATGAAAGCAAGGGTGAAGCAGCTGACAGAAGCAGCTTTCCACATAGAAGATGTCATTGATGAATATATGATCAGTGAGGGACAAGATGCTCGTGATCCTGGATGTGCAGCTGCTGTTGCTGACTTACTCAATACTGTGATTCTTCGTCTTCAAATAGCATACAAGATTCAAAACATCAAATCTCGAATTGGTGGAATGAAGGATACAAGTGGAAGAGATGGCTCCCAAACCCAATCCTCTTCAGAACAAGGACCAAGCAGTTCTGTAGCAAACCAAAATGCTGCACTATTGCAGAACCTTCGAGATGCTCCTCTTTACATGGACGAAGATGATGTTGTGGGATTTGAAGCCCCAATTGCTAAATTGATTGGTTGGTTGGTAAATGGAAGAGCAGAGCGCACTGTCATCTCTGTGGTAGGAATGGGAGGGCAAGGAAAAACCACTCTCGCGAAGAAAGTTTTTGACAACAAGGAGGTGATTGAGCACTTTGATTGTCGTGCATGGATCACAGTGTCTCTATCATATACAGTAGAAGGGTTGTTGAGGGACATGTTGCGCGAGTTTTACAAACAAAAAGGGGAAGATCCTCCTCATGGTATTTTCAGAATGGATCGAAGGTCGTTGATTAATGAAGTGAGAAACTACTTGCAGCAAAAGAGGTACATTATTGTGTTTGATGATGTATGGAACGTTCATTTTTGGAATGAGATTGAGTTTTCTGTAATTAAAAATAAAAATGGAAGCAAGATATTAATCACAACAAGAAAAATGGATGTTGCCCAATCTTGTAAGAAATCTTCTTTTGTTGAAGTGCATGAGCTGCAACGTTTAACTCAAGAACGATCCTTAAAGCTATTCAATAAGAAGGCATTCTTTGACTTGAATGAACGTTGCCCAAAAAATCTTATGAATATATCTTCCGAAATTGTTAACAAATGTGAGGGTTTGCCACTAGCAATTGTGGCCATTGGTGGTCTTTTATCTATCAAAGATAGAGATGCAGTTCAATGGAAGAGGTTTAGTGAAAATCTAAGTTTGGAGCTAAAGAAGGATTCCCATTTAATTGGGATAAAAAGAATTTTAGGTTTTAGTTACAATGATTTGTCTTACAATCTTAAGTCATGCTTGTTGTATTTTGGAATATATCCTGAAGACTATGTAGTTAAATCAAAGAGGCTGATTCGGCAGTGGATAGCCGAAGGATTTGTGAAAGAGGAAAGGGGCAAGACTTTGGAAGAAGTTGCGGAAGGATATTTAACAGAGTTGATCCATAGAAGTTTGGTGCAAGTATCTTCAATTACCATCGATGGAAAAGCTAAAGGTTGTCGCGTTCATGATCTATTACGTGTGCTGATCCTTGAAAAATTTGAGGATTTAAGTTTTTGCCAGCATACTAGTGAAGATAGTCAGTCATCCTTGAGTGGAATAATTCGACGCCTATCAATAGTGACCAATTCCAATGATTCATTGTCAAGCATTGAAAACTCACATGTTCGGTCACTACTTATTTTCACAAATAAAAAATTATCTGAATACTTTGTGAGGAAAATCACCACAACATACAAGCTGTTGAAAGTGCTTGATTTTGAAGGTGCTAGATGGTTTAGTGCTCCTACTAGATGGTCTAATGTTCCTAAAAATTTGGGAAGTTTGATCCACTTGAAGTATTTAAGCCTCAGGTATGAGAAGGTAGCACAAAGTGAACTTCTAAAATCCATTAGCATGCTCCAAAACCTGGAGACTTTGGATTTAAGGGATACAGGTGATTGGGAGATGCCAAAGGAGATTAGCAAGCTTAGAAAGCTAAGGCACCTTTTGGGAAACAAAATGTCTTTGATTCAATTGAAGGATGGTATTGGAGGCATGACTTTCCTACAAACTCTATTTTTTGTTGTATTAGATGGAGATGGAGTAGTAGAGCTAATTAGAGAGCTAGGAAAGCTGAAGCAGTTAAGGAAATTGGGCTTGCATGATGTTAGGGGAGAACATGGAAGCACTCTATCTTCCTCATTGAATGAAATGCAACACTTGGAGACACTACATATTGTATCAAAACCAAGCAATGAAGTCATTGATTTTCATTTTATTTCATCCCCACCGAAGCTTCGAAACCTTAGACTGTATGCAAAGTTAGAGCAGTTGCCAAAGTGGATTACAAAGCTTCAAAATCTTGTTAAGTTGACCTTGGCATTCTCTCAATTAACTGATGATCTAATGAAATCACTAAGAAATATGCAAAACTTGTTGTACCTCTCTATCAGCAACCATGCTTATGAAGGTGAAAGTTTACATTTTCAAGATGGAGTGTTGCAGAAATTAAAGGAACTATACCTTCGAGATTCAGATAACTTGAATTCTATCATCATTGACAAAGGAGCACTGCATTATCTGCAAAAGCTCGAGTTATGGAATATCCCCCAACTCAAGACAGTACCCACTGGCATCCAACACTTACAGAAGCTTGAAGTTCTCAGTATTCAGCATATGCCAACTGAATTTGTGCAGAGTATTGCTCCTGATGGAGGAAAAGAGCACTGGATGATCGAGCATGTGCCCCATGTAAAAATTGATACCATTCATAGCAAAGTAATGAGGGCGGGTCAAATATTCACCTCTCATAAACAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00870	41210	44047	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000870s00029780.1	PF00931.17	NB-ARC	186	477	3.70E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.648
SRR1783600	control	3.668
SRR1783602	moderate drought stress	5.562
SRR1811619	moderate drought stress	5.433

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.268
DRR006520	Root Summer glycyrrhizin high producing strain	0.265
DRR006521	Root Winter glycyrrhizin high producing strain	0.079
DRR006522	Root Winter glycyrrhizin high producing strain	0.077
DRR006523	Root Summer glycyrrhizin low producing strain	0.039
DRR006524	Root Summer glycyrrhizin low producing strain	0.039
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.131
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.131

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.235
SRR9715740	Leaf	0.133
SRR9715741	Leaf	0.151
SRR9715739	Root	0.308
SRR9715742	Root	0.385
SRR9715743	Root	0.194

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.016
SRR8749028	MeJA induced 9h	0.846
SRR8749029	MeJA induced 9h	0.107
SRR8749030	Uninduced	0.224
SRR8749031	Uninduced	0.027
SRR8749032	Uninduced	0.020

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.699
SRR8400027	Control - Root	3.339